We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5SCN | 2022 | 0 |
| 2MZY | 2015 | 0 |
| 7ULZ | 2022 | 0 |
| 4MG4 | 2013 | 0 |
| 7UMD | 2022 | 0 |
| 4MI2 | 2013 | 0 |
| 7UME | 2022 | 0 |
| 5SCX | 2022 | 0 |
| 7US6 | 2022 | 0 |
| 4N0Q | 2013 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3men | - | http://pubs.acs.org/doi/abs/10.1021/bi101859k | Structure of Prokaryotic Polyamine Deacetylase Reveals Evolutionary Functional Relationships with Eukaryotic Histone Deacetylases | 2011 | PM Lombardi, HD Angell, DA Whittington, EF Flynn? - Biochemistry, 2011 - ACS Publications | The recently solved X-ray crystal structure of the Burkholderia pseudomallei APAH dimer (PDB ID: 3MEN; 34% sequence identity with M. ramosa APAH) contains a 16-residue L2 loop insertion (A79−R101) between helices B2 and B3. |
| 2 | 3hhe | 3uw1, 3u7j, 3s5p | http://scripts.iucr.org/cgi-bin/paper?S174430911204273X | Structure of ribose 5-phosphate isomerase from the probiotic bacterium Lactobacillus salivarius UCC118 | 2012 | CMC Lobley, P Aller, A Douangamath? - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2012 - scripts.iucr.org | ... (2006). Acta Cryst. F62, 427-431.] ), Bartonella henselae (PDB entry 3hhe ; Seattle Structural Genomics Center for Infectious Disease, unpublished work), Vibrio vulnificus YJ016 (Kim et al., 2009 [Kim, TG, Kwon, TH, Min, K., Dong, M.-S., Park, YI & Ban, C. (2009). Mol. ... |
| 3 | 3kre | 3r9r | http://www.sciencedirect.com/science/article/pii/S0141813012004254 | Structure of SAICAR synthetase from< i> Pyrococcus horikoshii</i> OT3: Insights into thermal stability | 2013 | K Manjunath, SP Kanaujia, S Kanagaraj? - International journal of ?, 2012 - Elsevier | ... of the native and its complex from S. cerevisiae (PDB-ids: 1obg, 1obd, 2cnu, 2cnv, 2cnq), T. maritima (PDB-id: 1kut; [36]), E. coli (PDB-ids: 2gqs, 2gqr; [37]), G. kaustophilus (PDB-id: 2ywv), M. jannaschii (PDB-ids: 2z02, 2yzl), E. chaffeensis (PDB-id: 3kre), C. perfringens (PDB-id ... |
| 4 | 5i1f | - | http://scripts.iucr.org/cgi-bin/paper?dp5104 | Structure of the Bacillus anthracis dTDP-l-rhamnose-biosynthetic enzyme glucose-1-phosphate thymidylyltransferase (RfbA) | 2017 | J Baumgartner, J Lee, AS Halavaty- Section F: Structural, 2017 - scripts.iucr.org | The Mg2+ ion is modeled from the RffH structure The GalU homologs are from Burkholderia vietnamiensis ( PDB entry 5i1f ; Seattle Structural Genomics Center for Infectious Disease, unpublished work) and Sphingomonas elodea ( PDB entry 2ux8), respectively |
| 5 | 4dz4 | - | https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0248991 | Structure of the E. coli agmatinase, SPEB | 2021 | I Chitrakar, SF Ahmed, AT Torelli, JB French- Plos one, 2021 - journals.plos.org | The first stage used the default parameters with the structure of Burkholderia thailandensis hypothetical agmatinase ( 4DZ4 ) [34] as To place the ligand in the SPEB active site, the structure of the D. radiodurans agmatinase with bound hexane-1,6-diamine ( PDB code 1WOG |
| 6 | 3uw1 | - | http://onlinelibrary.wiley.com/doi/10.1111/febs.12856/full | Structure of the effector‐binding domain of deoxyribonucleoside regulator DeoR from Bacillus subtilis | 2014 | J Škerlová, M Fábry, M Hubálek, Z Otwinowski… - FEBS …, 2014 - Wiley Online Library | ... Superposition of the CggR structure with the C-DeoR structures provides RMSD values of 2.6and 2.7 Å for effector-bound and free ... view in (A). (C) Superposition of C-DeoR (green) withribose-5-phosphate isomerase A from B. thailandensis (gold, PDB code 3UW1) [11] in ... |
| 7 | 3d6b | - | http://scripts.iucr.org/cgi-bin/paper?S0907444913021859 | Structure of the prolyl-acyl carrier protein oxidase involved in the biosynthesis of the cyanotoxin anatoxin-a | 2013 | K Moncoq, L Regad, S Mann, A Mejean and O Ploux - Acta Crystallographica Section D Biological Crystallography, 2013 - scripts.iucr.org | ... coordinates and structure factors have been deposited in the Protein Data Bank (PDB) as entry ...PDB code, Enzyme, Enzyme class, Source, Identity (%), Similarity (%), Rmsd (?), No. ... 3d6b, Glutaryl-CoA dehydrogenase (apoenzyme), GCD, Burkholderia pseudomallei, 27, 45, 1.88, ... |
| 8 | 3laa | - | https://www.sciencedirect.com/science/article/pii/S1047847719301728 | Structure of the UspA1 protein fragment from Moraxella catarrhalis responsible for C3d binding | 2019 | KM Mikula, R Kolodziejczyk, A Goldman- Journal of structural biology, 2019 - Elsevier | 2012) as found in SadA (2YO2, 2YNZ) (Hartmann et al., 2012) or BpaA ( 3LAA ) (Edwards et CCP4 package (Winn et al., 2011) with the structure of UspA1 165366 ( PDB : 3PR7) (Agnew Model of UspA1 299452 structure solved in this study, neck and coiled-coil domains; chain |
| 9 | 4h4g | 3p0x, 3p4t, 3e5b, 3i4e, 3oib | http://search.proquest.com/openview/9b52df086a0858392215929c4a0b2187/1?pq-origsi... | Structure of the Vibrio cholerae fatty acid regulator FadR | 2015 | W Shi - 2015 - search.proquest.com | ... 3D6X, 1ZHG, 3DOY, 3DOZ, 3DP0, 3DP1, 3DP2, 3DP3, 3CF8, 3CF9, 3ED0, 3B7J, 3D04, 3AZ9,3AZ8, 3AZA, 3AZB, 4H4G, 2OKH, 2OKI ... (52, 70) and DNA-bound (PDB 1H9T and 1HW2) (69,70) structures are almost identical whereas the ligand-bound structure shows the ... |
| 10 | 4tu1 | - | http://scripts.iucr.org/cgi-bin/paper?S2053230X14017087 | Structure of Toxoplasma gondii fructose-1, 6-bisphosphate aldolase | 2014 | LE Boucher, J Bosch - Acta Crystallographica Section F: Structural …, 2014 - scripts.iucr.org | ... bound to TRAP (PDB entry 2pc4 , chain D) and TgAldolase (PDB entry 4tu1 , chains A ... highlightsthe residues important for adhesin binding in the TRAP-bound PfAldolase structure (PDB entry2pc4 ... to -helix 10 in chain A does not align with the PfAldolase structure; however, the ... |