We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7JZU | 2020 | 32 |
| 7JW0 | 2021 | 32 |
| 6Q04 | 2020 | 26 |
| 7JVA | 2021 | 25 |
| 2LWK | 2012 | 24 |
| 7JZL | 2020 | 23 |
| 7JV2 | 2021 | 23 |
| 7RAL | 2021 | 22 |
| 6X79 | 2020 | 22 |
| 7JVC | 2021 | 22 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3eoo | - | http://www.sciencedirect.com/science/article/pii/S0743731511001948 | Accelerating knowledge-based energy evaluation in protein structure modeling with Graphics Processing Units | 2012 | A Yaseen, Y Li - Journal of Parallel and Distributed Computing, 2011 - Elsevier | ... PDB #of Res #of Atoms GPU Time L1 hits L1 misses Divergent Branches Sorted (??sec) Unsorted (??sec) Sorted/ Unsorted Sorted Unsorted Sorted Unsorted Sorted Unsorted 1PRB 53 419 49 76 ... 1.05 6,88 5 ,7 80 3,83 9 ,5 00 36 4, 04 8 66 6, 21 7 17 9, 78 4 33 ,5 41 3EOO 4,59 ... |
| 2 | 6blj | - | https://www.mdpi.com/2073-4425/9/12/612 | Acceptor Stem Differences Contribute to Species-Specific Use of Yeast and Human tRNASer | 2018 | MD Berg, J Genereaux, Y Zhu, S Mian, GB Gloor- Genes, 2018 - mdpi.com | sapiens (4L87; [46]), Naegleria fowleri ( 6BLJ ), and Thermus thermophilus (1SET; [47]) from the Protein Data Bank were used to construct a structural alignment. ASN.1 files for each structure were obtained from the Molecular Modeling Database, and the structures were aligned |
| 3 | 5v6d | - | https://papers.ssrn.com/sol3/papers.cfm?abstract_id=3188389 | A Centipede Toxin Family Defines a New Ancient Class of CS Defensins | 2018 | TS Dash, T Shafee, PJ Harvey, C Zhang- Available at SSRN, 2018 - papers.ssrn.com | structure of Sm2 against all structures of proteins contained within the Protein Data Bank ( PDB ) that are composed of more than 30 amino acids Thus, the minimal cysteine motif is by itself sufficient to generate a stable CS structure . Although the 2ds-CS architecture has |
| 4 | 4ijn | - | http://tigerprints.clemson.edu/all_dissertations/1976/ | Acetate Metabolism: The physiological role of ADP-forming acetyl-CoA synthetase and acetate kinase in Entamoeba histolytica | 2017 | T Dang - 2017 - tigerprints.clemson.edu | ... these predictions. Inhibition and structural activity relationship studies revealed an ... 1.6 Acetate producing pathways within E. histolytica.....26 1.7 The structure of Methanosarcina thermophila acetate kinase.....30 ... |
| 5 | 3p0x | - | https://www.nature.com/articles/s41467-019-12614-7 | Acetyl-CoA-mediated activation of Mycobacterium tuberculosis isocitrate lyase 2 | 2019 | RP Bhusal, W Jiao, BXC Kwai, J Reynisson- Nature, 2019 - nature.com | The structural resemblance of the Mtb ICL2 C-terminal domain to members of the GNAT observed in crystal structures of isocitrate-bound ICL1 from Brucella melitensis (Bm ICL1, PDB 3P0X ) of the active site loop are more similar to that found in the crystal structure of substrate |
| 6 | 3dmo | - | http://permalink.lanl.gov/object/tr?what=info:lanl-repo/lareport/LA-UR-11-04078 | Achievements of structural genomics | 2011 | TC Terwilliger - 2011 - permalink.lanl.gov | ... Semi-automated Structure determination ~ ... PDB 3BV6, 2275 AA Metallo protein - ... l University ofIowa 2 University of Michigan Medical School Crystal structures of the FDTS-FAD- 3The JointCenter for Structural Genomics at GNF 4SSRL, Stanford University dUMP complex. ... |
| 7 | 6q04 | - | https://link.springer.com/article/10.1007/s00705-021-04961-y | A comparative study of human betacoronavirus spike proteins: structure, function and therapeutics | 2021 | J Verma, N Subbarao- Archives of virology, 2021 - Springer | Coronaviruses are the paradigm of emerging 21st century zoonotic viruses, triggering numerous outbreaks and a severe global health crisis. The current COVI. |
| 8 | 3sdo | - | https://link.springer.com/article/10.1007/s12539-017-0266-z | A Comprehensive Computational Analysis of Mycobacterium Genomes Pinpoints the Genes Co-occurring with YczE, a Membrane Protein Coding Gene | 2017 | T Milano, S Angelaccio, A Tramonti, ML di Salvo- Interdisciplinary, 2017 - Springer | Clustal Omega multiple sequence alignment between the “luciferase-like” cluster sequences and a set of PDB structures detected by Phyre2 and/or HHpred. Sequence ids refer to Table 3 while PDB codes indicate: 3SDO|A, the chain A of nitrilotriacetate monooxygenase from Burkholderia pseudomallei |
| 9 | 3v2i | 4dz4, 4f3y | http://scjournal.ius.edu.ba/index.php/scjournal/article/view/152 | A Computational Biology Approach in Function Annotation to Enzymes | 2018 | M Ljubijankic- Southeast Europe Journal of Soft Computing, 2018 - scjournal.ius.edu.ba | 3.5.3.1 2Q47 3.1.1.3 3.1.3.48 3SF8 3.1.6. 3.4.-.- 3V2I 3.4.19.12 3.1.1.29 is observed in the example of the survival protein E (SurE) from Thermotogamaritima ( PDB ID 1ilv). Zhang and colleagues (2001) determined the crystal structure of this protein and in their work, described it |
| 10 | 3ek1 | 3i44 | http://www.sciencedirect.com/science/article/pii/S1359511316300393 | A computational integrating kinetic study on the flexible active site of human acetaldehyde dehydrogenase 1 | 2016 | Y Xu, J Lee, HS Yang, ZR L, H Mu, JM Yang - Process , 2016 - Elsevier | ... In the first step, binding pocket residues were calculated based on the 3D structure of ALDH1via the Pck pocket ... We found 25 template PDB structures (1a4s, 1bxs, 1euh, 1o04, 1t90, 1uxt,1uzb, 1wnd, 2d4e, 2imp, 2j6l, 2o2p, 2ve5, 2w8n, 3b4w, 3ed6, 3ek1, 3i44, 3ifg, 3jz4 ... |