We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3CEZ | 2008 | 13 |
| 7JV6 | 2021 | 13 |
| 4GIE | 2012 | 13 |
| 4O3V | 2014 | 13 |
| 3DAH | 2008 | 13 |
| 3KHW | 2010 | 12 |
| 3MEQ | 2010 | 12 |
| 3FDZ | 2009 | 12 |
| 4G50 | 2012 | 12 |
| 3IXC | 2009 | 12 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3urr | - | https://journals.asm.org/doi/abs/10.1128/jb.00023-23 | All dacs in a row: domain architectures of bacterial and archaeal diadenylate cyclases | 2023 | MY Galperin- Journal of Bacteriology, 2023 - Am Soc Microbiol | The search of the AlphaFold-predicted structure of DACNG using Dali (90) does not show any closely related structures in the PDB . This domain can also be found in a stand-alone ... PTS_EIIA_2 PF00359 139 3URR |
| 2 | 7jzl | 7jzn | https://pubs.acs.org/doi/abs/10.1021/acs.jcim.1c00766 | Allosteric Control of Structural Mimicry and Mutational Escape in the SARS-CoV-2 Spike Protein Complexes with the ACE2 Decoys and Miniprotein Inhibitors: A | 2021 | GM Verkhivker, S Agajanian, DY Oztas- Journal of Chemical, 2021 - ACS Publications | Allosteric Control of Structural Mimicry and Mutational Escape in the SARS-CoV-2 Spike Protein Complexes with the ACE2 Decoys and Miniprotein Inhibitors: A Network-Based Approach for Mutational Profiling of Binding and Signaling |
| 3 | 3obk | - | http://www.sciencedirect.com/science/article/pii/S000398611100347X | Allostery and the dynamic oligomerization of porphobilinogen synthase | 2012 | EK Jaffe, SH Lawrence - Archives of biochemistry and biophysics, 2011 - Elsevier | ... B) Subunits B, A and E (corresponding to subunits A,B and F of the oligomers illustrated in part A) of T. gondii PBGS (pdb: 3OBK) are shown as dark teal, gray and light teal cartoons with the remaining subunits of the 8mer shown as transparent white spheres. ... |
| 4 | 3sbx | - | https://www.nature.com/articles/s41598-019-53171-9 | A LONELY GUY protein of Bordetella pertussis with unique features is related to oxidative stress | 2019 | F Moramarco, A Pezzicoli, L Salvini, R Leuzzi- Scientific reports, 2019 - nature.com | first resorted to a theoretical approach. This involved overlapping a model of BP1253 with a monomer of the type-I LOG protein of M. marinum co-crystallized with AMP (MmLOG, PDB 3SBX ) 14,19 . BP1253 was modeled on a |
| 5 | 3la9 | 3laa, 4lgo, 3s6l | http://elifesciences.org/content/5/e11861v1 | alpha/beta coiled coils | 2016 | MD Hartmann, CT Mendler, J Bassler, I Karamichali - eLife, 2016 - elifesciences.org | ... 286 Given the structural identity between the -layers resulting from hexads and nonads in 287coiled coils, and the supersecondary structures we characterized at the transition between 288 ...systematically for other instances of -layers in proteins of known structure. ... |
| 6 | 4gnv | - | https://pubs.rsc.org/en/content/articlehtml/2018/cc/c8cc05281f | A mechanism-based GlcNAc-inspired cyclophellitol inactivator of the peptidoglycan recycling enzyme NagZ reverses resistance to -lactams in Pseudomonas | 2018 | LA Ho, JL Winogrodzki, AW Debowski- Chemical, 2018 - pubs.rsc.org | Fig. 2 Crystal structure of BcNagZ bound to 2. (A) Electron density (sigma-A weighted difference map (mF o DF c ) contoured at 4) for 2 (green carbon atoms (B) BcNagZ active site bound to 2 (green carbon atoms) with the BcNagZ product complex PDB 4GNV superposed |
| 7 | 4yet | 3js4 | http://www.doiserbia.nb.rs/Article.aspx?id=0352-51392100042S | Amide- interactions in active centers of superoxide dismutase | 2021 | S Stojanovi, ZZ Petrovi- Journal of the Serbian, 2021 - doiserbia.nb.rs | A, 3js4:A, 3lio:A, 3lsu:A, 3mds:A, 3pu7:A, 3tqj:A, 4br6:A, 4c7u:A, 4f2n:A, 4ffk:A, 4yet :A, 5a9g 7. Example of the structure preferred amide interactions of FeSOD from the Thermosynechococcus elongatus ( PDB code 1my6): (a) parallel-displaced and (b) T-shaped structure |
| 8 | 4o6r | 4kna, 3i44, 3ek1 | http://www.sciencedirect.com/science/article/pii/S0009279715000253 | Amino acid residues that affect the basicity of the catalytic glutamate of the hydrolytic aldehyde dehydrogenases | 2015 | RA Muñoz-Clares, L González-Segura… - Chemico-Biological Interactions, 2015 - Elsevier | ... groups as sticks with carbon atoms colored depending on the structure, oxygen in ... Family organism,enzyme (PDB code), pH crystal c, pK a, Hydrogen bond d ... Burkholderia cenocepacia, BCAM0469,AMP-complex (4O6R), 6.5, 7.42, Cys302↓ Gly270↓/Lys178↓ Glu399↑ Glu476 ... |
| 9 | 4dlp | 4ncx | https://www.biorxiv.org/content/early/2018/10/11/440891.abstract | Aminoacyl tRNA Synthetases as Malarial Drug Targets: A Comparative Bioinformatics Study | 2018 | DW Nyamai, OT Bishop- bioRxiv, 2018 - biorxiv.org | are highly conserved in their catalytic domains, in general aaRSs show sequence, structural 62 catalytic site architecture and the manner of charging tRNA [18,20] the connective peptide I (CPI) in all enzymes in this class whose structure is characteristic of 113 |
| 10 | 4gri | - | https://journals.asm.org/doi/abs/10.1128/ecosalplus.ESP-0002-2016 | Aminoacyl-tRNA synthetases in the bacterial world | 2016 | R Gieg, M Springer- EcoSal Plus, 2016 - Am Soc Microbiol | Note that aaRSs requiring cognate tRNA for activation can tightly bind their amino acid substrates in the absence of tRNA, thereby leading to inactive conformers as seen, e.g., in E. coli ArgRS (4oby) (178) and B. burgdorferi GluRS (4gri) (unpublished from the Seattle Structure Genomics Center for Infectious Disease). |