We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5v6d | 4dut, 6ay1, 4ek2, 4hr2 | https://www.mdpi.com/1422-0067/21/18/6779 | Structure, Folding and Stability of Nucleoside Diphosphate Kinases | 2020 | F Georgescauld, Y Song, A Dautant- International Journal of Molecular, 2020 - mdpi.com | So far, 162 structures from 30 different species have been deposited within the Protein Data Bank ( PDB ) which fall to tetramer type II and two are isolated dimers [23,24,25] (Table 1). The structure of most tetramers was recently solved by a structural genomics approach yet ... 5v6d Neisseria gonorrhoeae in complex with citrate (1.85 Å) Abendroth, J.; Mayclin, S.J.; Lorimer, D.D.; Edwards, T.E. |
| 2 | 4ol9 | 4qji | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7770189/ | Vitamin in the Crosshairs: Targeting Pantothenate and Coenzyme A Biosynthesis for New Antituberculosis Agents | 2020 | HS Butman, TJ Kotz, CS Dowd- Frontiers in Cellular and, 2020 - ncbi.nlm.nih.gov | This review gathers literature reports on the structure /mechanism, inhibitors, and vulnerability of each enzyme in the CoA pathway... To date, there is very little information available for the Mtb PanE homologue (MtPanE). The activity of the protein expressed by the putative panE gene (Rv2573) has not been experimentally verified, although its crystal structure bound to NADP+ and oxamate has been solved (PDB ID: 4OL9). |
| 3 | 4noz | 4mh4 | https://pubs.acs.org/doi/abs/10.1021/acscatal.0c01257 | Substrate and product-assisted catalysis: molecular aspects behind structural switches along Organic Hydroperoxide Resistance Protein catalytic cycle | 2020 | R Mateus Domingos, RD Teixeira, A Zeida- ACS, 2020 - ACS Publications | The Ohr active site architecture is composed of two cysteines structures (Figure S1). Notably, when analyzing the other Ohr structures available in the PDB , we observed that the position of the Arg-loop in the Bacillus subtilis OhrB (BsOhrB) structure presents an intermediate |
| 4 | 4jgb | 4jga | https://royalsocietypublishing.org/doi/abs/10.1098/rsob.200099 | TAK1: a potent tumour necrosis factor inhibitor for the treatment of inflammatory diseases | 2020 | J Totzke, SA Scarneo, KW Yang- Open, 2020 - royalsocietypublishing.org | A general core structure for type II binders has been developed, consisting of a hydrophobic moiety Structural disorder of this region is often cited as a reason for the missing residues of Ligand 10 (purple, PDB 4JGA), 11 (orange, PDB 4JGB ) and 12 (dark green, PDB 4JGD) are |
| 5 | 5ucm | - | https://books.google.com/books?hl=en&lr=&id=0-L7DwAAQBAJ&oi=fnd&pg=PA69&dq=%225U... | trans-Editing by aminoacyl-tRNA synthetase-like editing domains | 2020 | ABK Nagy, M Bakhtina- Biology of Aminoacyl, 2020 - books.google.com | bound by an autonomous trans- editing factor, such as C. crescentus ProXp-ala ( PDB ID: 5VXB PheRS is also unique in its oligomeric structure it is a heterote- tramer domain ( bound in an editing active conformation will be needed to fully understand the structural basis for |
| 6 | 3eiy | - | https://www.biorxiv.org/content/10.1101/2020.07.15.204701v1.abstract | Graphein-a Python Library for Geometric Deep Learning and Network Analysis on Protein Structures | 2020 | AR Jamasb, P Li, T Blundell- bioRxiv, 2020 - biorxiv.org | Figure 1. Example outputs from Graphein. A Example protein surface ( 3eiy ). B Example node feature matrix for the residue-level graphs outlined The interaction status data and structure originate from structures of the complexes in the RCSB PDB |
| 7 | 3cez | 3cxk | https://www.liebertpub.com/doi/abs/10.1089/ars.2020.8037 | Structure and Electron-transfer Pathway of the Human Methionine Sulfoxide Reductase MsrB3 | 2020 | G Javitt, Z Cao, E Resnick, R Gabizon- and Redox Signaling, 2020 - liebertpub.com | MsrB3 molecules per asymmetric unit. The structure was solved by molecular replacement using a bacterial MsrB protein ( PDB code 3CEZ ) with high sequence identity to human MsrB3 (74 of 119 residues, or 62%) (6). Though the amino-terminal segment containing |
| 8 | 6nb8 | - | https://saudijournals.com/media/articles/SIJB_36_143-153.pdf | Drug Targets for Corona Virus (COVID-19): A Systematic Review | 2020 | K Jayakumar - 2020 - saudijournals.com | to neutralize it, and their structures are also available ( PDB IDs: 6NB6, 6NB7, and 6NB8 .The monoclonal antibody, m396, has a competitive role for RBD binding ( PDB ID: 2DD8 However, the structure is highly variable among different members of the CoV family |
| 9 | 3v7o | 5dvw | https://www.sciencedirect.com/science/article/pii/S0006291X20303636 | Crystal structure of the Mngl virus VP30 C-terminal domain | 2020 | S Dong, K Wen, H Chu, H Li, Q Yu, C Wang- and Biophysical Research, 2020 - Elsevier | VP30 CTD dimers formed from adjacent crystallographic asymmetric units with those of MARV ( PDB code: 5T3W), RESTV ( PDB code: 3V7O ) and EBOV ( PDB code: 5T3T) In this study, we determined the crystal structure of MLAV VP30 CTD monomer at 1.4 resolution |
| 10 | 4f4f | 3v7n | https://link.springer.com/article/10.1007/s11030-020-10129-8 | Modeling and simulation study to identify threonine synthase as possible drug target in Leishmania major | 2020 | RJ Meshram, KT Bagul, SU Aouti, AM Shirsath- Molecular Diversity, 2020 - Springer | conformational changes. Moreover, we address some important structural and dynamic interactions in the PLP binding region of TS that are in good agreement with previously speculated crystallographic estimations. Additionally |