SSGCID
Seattle Structural Genomics Center for Infectious Disease

Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Manually reviewed citations

# PDB Additional SSGCID structures cited Link Title Year Citation Highlighted abstract
1 3o0m - http://www.sciencedirect.com/science/article/pii/S002228361100492X Structural Insights into the Novel Diadenosine 5′,5‴-P1,P4-Tetraphosphate Phosphorylase from Mycobacterium tuberculosis H37Rv 2011 S Mori, K Shibayama, JI Wachino, Y Arakawa - Journal of Molecular Biology, 2011 - Elsevier ... Homo sapiens fragile HIT protein [Fhit; Protein Data Bank (PDB) IDs: 6FIT and 1FHI; Z-score = 16.1 and 15.8, respectively], which is a HIT family Ap n A hydrolase; [11] and [12] Zn-bound HIT family protein from Mycobacterium smegmatis (MSMEG5028; PDB ID: 3O0M; Z-score ...
2 3dmo - http://permalink.lanl.gov/object/tr?what=info:lanl-repo/lareport/LA-UR-11-04078 Achievements of structural genomics 2011 TC Terwilliger - 2011 - permalink.lanl.gov ... Semi-automated Structure determination ~ ... PDB 3BV6, 2275 AA Metallo protein - ... l University ofIowa 2 University of Michigan Medical School Crystal structures of the FDTS-FAD- 3The JointCenter for Structural Genomics at GNF 4SSRL, Stanford University dUMP complex. ...
3 3ijp - http://www.sciencedirect.com/science/article/pii/S0014579311005503 Structure and nucleotide specificity of< i> Staphylococcus aureus</i> dihydrodipicolinate reductase (DapB) 2011 TS Girish, V Navratna, B Gopal - FEBS letters, 2011 - Elsevier ... from Escherichia coli, Mycobacterium tuberculosis, Thermotoga maritima and Bartonella henselae have been determined ( [10], [11] and [18]; PDB:1VM6 (Joint Centre for Structural Genomics) and PDB:3IJP (Seattle Structural Genomics Center for Infectious Disease). ...
4 3ftp 3lls, 3grp http://www.sciencedirect.com/science/article/pii/S1047847710003497 Crystal structure of FabG4 from< i> Mycobacterium tuberculosis</i> reveals the importance of C-terminal residues in ketoreductase activity 2011 D Dutta, S Bhattacharyya, S Mukherjee, B Saha? - Journal of Structural Biology, 2011 - Elsevier ... to 356 (loop II), and 395 to 417. Domain II is the catalytic domain and share highest sequence homology with Burkholderia Pseudomallei FabG (PDB: 3FTP, 42% in 248 residues overlap). The active site, deep-seated into the ...
5 3oec - http://www.jbc.org/content/286/42/37011.short Biochemical Studies and Ligand-bound Structures of Biphenyl Dehydrogenase from Pandoraea pnomenusa Strain B-356 Reveal a Basis for Broad Specificity of the Enzyme 2011 S Dhindwal, DN Patil, M Mohammadi? - Journal of Biological Chemistry, 2011 - ASBMB ... PDB code 1BDB and BphB B-356 are shown in black color, and other structures are shown in light colors. These PDB codes are: 2HQ1, 3OEC, 3PKO, 2UVD, 2PNF, 2WSB, 1YDE, 2WDZ, 1HDC, and 1NFR. Reactivity of BphB B-356 with Polychlorinated Biphenyls. ...
6 3moy - http://onlinelibrary.wiley.com/doi/10.1002/jcc.21900/full Fast and accurate computation schemes for evaluating vibrational entropy of proteins 2011 B Xu, H Shen, X Zhu, G Li - Journal of computational chemistry, 2011 - Wiley Online Library ... PDB id, Protein length, Standard NMA (kcal mol ?1 K ?1 ), Scaled BNM (kcal mol ?1 K ?1 ), Scaled GNM (kcal mol ?1 K ?1 ), Scaled ANM (kcal mol ?1 K ?1 ). 1al3, 324, 8.462, 8.405, 8.466, 8.818. ... 3m73, 314, 10.930, 10.912, 11.027, 10.248. 3moy, 263, 9.020, 9.108, 9.183, 9.171. ...
7 3enk - http://www.sciencedirect.com/science/article/pii/S0003269710007165 Highly selective l-threonine 3-dehydrogenase from< i> Cupriavidus necator</i> and its use in determination of l-threonine 2011 T Ueatrongchit, Y Asano - Analytical Biochemistry, 2011 - Elsevier ... BaGluE, UDP-glucose 4-epimerase from Bacillus anthracis (2C20); BpGluE, UDP-glucose 4-epimerase from Burkholderia pseudomallei (3ENK); SvDHT, DTDP-glucose 4,6-dehydratase from Streptomyces venezuelae (1R66); ...
8 3men - http://pubs.acs.org/doi/abs/10.1021/bi101859k Structure of Prokaryotic Polyamine Deacetylase Reveals Evolutionary Functional Relationships with Eukaryotic Histone Deacetylases 2011 PM Lombardi, HD Angell, DA Whittington, EF Flynn? - Biochemistry, 2011 - ACS Publications The recently solved X-ray crystal structure of the Burkholderia pseudomallei APAH dimer (PDB ID: 3MEN; 34% sequence identity with M. ramosa APAH) contains a 16-residue L2 loop insertion (A79−R101) between helices B2 and B3.
9 3qbp 3qh8 http://dl.acm.org/citation.cfm?id=2213792 Protein surface characterization using an invariant descriptor 2011 ZA Deeb, DA Adjeroh, BH Jiang - Journal of Biomedical Imaging, 2011 - dl.acm.org ... 1. Introduction The Protein Data Bank (http://www.pdb.org/pdb/home/ home.do) (PDB) currently has more than 3000 protein struc- tures classified as uncharacterized or as proteins of unknown function. This is about 5% of the total structures in PDB. ...
10 3fvb - http://scholarworks.gsu.edu/cgi/viewcontent.cgi?article=1054&context=chemistry_d... I. Synthesis Of Anthraquinone Derivatives For Electron Transfer Studies In DNA. II. Characterization Of The Interaction Between Heme And Proteins. 2011 Y Cao - 2011 - scholarworks.gsu.edu ... 64 Figure 3.2 (A) The active site of HSA (PDB ID 1N5U); Lys190 is in blue; (B) The active site of Mb (1WLA); Lys45 and Lys96 are in blue. ... (A) The IsdA (PDB ID: 2ITF) binding pocket; (B) the IsdC (PDB ID: 2O6P) binding pocket; (C) the Shp (PDB ID: 2Q7A) ...