We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
|#||PDB||Additional SSGCID structures cited||Link||Title||Year||Citation||Highlighted abstract|
|1||3ecd||-||http://mcb.asm.org/content/28/14/4507.short||Single-stranded oligonucleotides can inhibit cytokine production induced by human toll-like receptor 3||2008||CT Ranjith-Kumar, KE Duffy, JL Jordan? - Molecular and cellular biology, 2008 - Am Soc Microbiol||... (C) The locations of peptides P1 and P2 within the three-dimensional model of 3ECD (PDB accession number, 1ZIW). The peptide spanning residues 211 to 222 is in green, and the one spanning residues 560 to 583 is in yellow. ...|
|2||3gwe||-||http://www.sciencedirect.com/science/article/pii/S0014579309006140||Crystal structures of bacterial FabH suggest a molecular basis for the substrate specificity of the enzyme||2009||KS Gajiwala, S Margosiak, J Lu, J Cortez, Y Su, Z Nie? - FEBS letters, 2009 - Elsevier||... bacterial species, two of which are Gram-positive organisms (E. faecalis and S. aureus) and five Gram-negative (E. coli and , H. influenzae, A. aeolicus (PDB ID: 2EBD), T. thermophilus (PDB ID: 1UB7) and B. pseudomallei (PDB ID: 3GWE)); M. tuberculosis and ...|
|3||3ecd||-||http://www.uib.no/People/nmaxt/papers/pan1.pdf||Model the Solvent-Excluded Surface of 3D Protein Molecular Structures Using Geometric PDE-Based Level-Set Method||2009||Q Pan, XC Tai - Communications in Computational Physics, 2009 - uib.no||... where ? is a very small value and chosen to be O(?x). 3 Numerical implementation 3.1 Initial construction The data of the complex 3D protein molecular structures, saved as pdb format files, can be downloaded from the free website of the protein data bank: http://www.rcsb.org. ...|
|4||3cez||-||http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2958.2009.06680.x/full||Structural and kinetic analysis of an MsrA-MsrB fusion protein from Streptococcus pneumoniae||2009||YK Kim, YJ Shin, WH Lee, HY Kim? - Molecular Microbiology, 2009 - Wiley Online Library||... The Protein Data Bank accession codes for other Msr proteins discussed in this article are as follows: BtMsrA (1FVA), EcMsrA (1FF3), MtMsrA (1NWA), NmMsrA (3BQE, 3BQF, 3BQH), PtMsrA (2J89), BsMsrB (1XM0), BpMsrB (3CEZ, 3CXK) and NgMsrB (1L1D). Kinetic assays. ...|
|5||3eg4||-||http://www.sciencedirect.com/science/article/pii/S0022283609004914||The three-dimensional Structure of a mycobacterial DapD provides insights into DapD diversity and reveals unexpected particulars about the enzymatic mechanism||2009||L Schuldt, S Weyand, G Kefala, MS Weiss - Journal of molecular biology, 2009 - Elsevier||... coli (PDB entry 3BXY), 7 Campylobacter jejuni (PDB entry 2RIJ, Joint Center for Structural Genomics, unpublished results), Enterococcus faecalis (PDB entry 3CJ8, K. Tan et al., unpublished results) and Brucella melitensis biovar abortus (PDB entry 3EG4, Seattle Structure ...|
|6||3hwi||-||http://onlinelibrary.wiley.com/doi/10.1002/pro.260/full||Crystal structure of YnjE from Escherichia coli, a sulfurtransferase with three rhodanese domains||2009||P H?nzelmann, JU Dahl, J Kuper, A Urban? - Protein Science, 2009 - Wiley Online Library||... The tandem-domain rhodaneses from Thermus thermophilus (PDB entry 1uar), Mycobacterium tuberculosis (PDB entry 3hwi), Azotobacter vinelandii (Av_RhdA, PDB entry 1e0c) and Bos taurus (Rhodbov, PDB entry 1boi) with Z-scores of ?30 and rms deviations of about 2.2 ? ...|
|7||3d6b||3ii9||http://pubs.acs.org/doi/abs/10.1021/ja908555n||User-loaded SlipChip for equipment-free multiplexed nanoliter-scale experiments||2009||L Li, W Du, R Ismagilov - Journal of the American Chemical Society, 2009 - ACS Publications||... These crystals yielded a structure of 2.2 ? resolution and space group P2 1 2 1 2 1 (PDBid3D6B). Without ... manuscript. We thank Bart Staker for checking the structure of glutaryl-CoA dehydrogenase for PDB deposition. Supporting Information ...|
|8||3dah||3kjr, 3i3r||http://pubs.acs.org/doi/abs/10.1021/ja908558m||Multiparameter screening on slipchip used for nanoliter protein crystallization combining free interface diffusion and microbatch methods||2009||L Li, W Du, RF Ismagilov - Journal of the American Chemical Society, 2009 - ACS Publications||... The crystal structure was determined at 2.3 ? resolution (PDBid: 3DAH). ... 37 mM sodium citrate, pH 5.5) yielding crystals in space group P4 3 2 1 2. We obtained a data set at 1.83 ? with crystals produced by scaling up, and the structural determination and PDB deposition are in ...|
|9||3cez||3cxk||http://www.sciencedirect.com/science/article/pii/S002228360901095X||Methionine sulfoxide reductase B displays a high level of flexibility||2009||FM Ranaivoson, F Neiers, B Kauffmann? - Journal of molecular Biology, 2009 - Elsevier||... View thumbnail images View high quality image (983K). Two X-ray structures of MsrB from Neisseria gonorrhoeae [Protein Data Bank (PDB) ID 1L1D 12 ] and Burkhodelia pseudomallei (PDB IDs 3CXK and 3CEZ; unpublished results) have been determined so far. ...|
|10||3fvb||-||https://circle.ubc.ca/handle/2429/13707||Catalysis of iron core formation in Escherichia coli bacterioferritin||2009||S Wong - 2009 - circle.ubc.ca||... Another example of a small molecule occupying a ferroxidase pore was recently discovered through crystallographic analysis of BFR from Brucella melitensis (PDB ID: 3FVB). This structure revealed imidazole bound to iron at the ferroxidase site such that the imidazole is located in the ferroxidase pore directly between the ferroxidase site and the pore opening. ...|