We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7RA8 | 2021 | 12 |
| 7M53 | 2021 | 12 |
| 3I4E | 2009 | 12 |
| 3I3R | 2009 | 11 |
| 4LGV | 2013 | 11 |
| 3O0M | 2010 | 11 |
| 3H7F | 2009 | 11 |
| 4EQY | 2012 | 11 |
| 3EK2 | 2008 | 11 |
| 3EK1 | 2008 | 11 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3rd5 | - | https://www.hindawi.com/journals/tswj/2014/971258/ | Prediction and analysis of surface hydrophobic residues in tertiary structure of proteins | 2014 | S Malleshappa Gowder, J Chatterjee- The Scientific World, 2014 - hindawi.com | After assigning the confidence score, we checked out accuracy of results based on its observed result from NACCESS server which is based on PDB structural results. Over 76% of |
| 2 | 6wpt | 7jw0, 7jx3 | https://www.nature.com/articles/s41467-022-32665-7 | Omicron SARS-CoV-2 mutations stabilize spike up-RBD conformation and lead to a non-RBM-binding monoclonal antibody escape | 2022 | Z Zhao, J Zhou, M Tian, M Huang, S Liu, Y Xie- Nature, 2022 - nature.com | targeted by S309 in the prototype (yellow) ( PDB : 6WPT ) 6 and Omicron (orange). Key ( PDB : 7JW0) 24 was aligned with our Omicron RBD-S304 structure and these two structures were |
| 3 | 6vyb | 6vxx | https://link.springer.com/article/10.1007/s40495-021-00259-4 | Phytocompounds of Rheum emodi, Thymus serpyllum, and Artemisia annua Inhibit Spike Protein of SARS-CoV-2 Binding to ACE2 Receptor: In Silico | 2021 | R Rolta, D Salaria, PP Sharma, B Sharma- Current pharmacology, 2021 - Springer | -CoV-2 spike ectodomain structure ( 6VYB , open state) with a ( PDB ID: 6VXX, and 6VYB ) have 6Na + ions to neutralize complexes. The artemisinin complexes with 6VXX and 6VYB |
| 4 | 3dah | 3kjr, 3i3r | http://pubs.acs.org/doi/abs/10.1021/ja908558m | Multiparameter screening on slipchip used for nanoliter protein crystallization combining free interface diffusion and microbatch methods | 2009 | L Li, W Du, RF Ismagilov - Journal of the American Chemical Society, 2009 - ACS Publications | ... The crystal structure was determined at 2.3 ? resolution (PDBid: 3DAH). ... 37 mM sodium citrate, pH 5.5) yielding crystals in space group P4 3 2 1 2. We obtained a data set at 1.83 ? with crystals produced by scaling up, and the structural determination and PDB deposition are in ... |
| 5 | 5idv | - | https://www.sciencedirect.com/science/article/pii/S0969212618301710 | Conformational States of ABC Transporter MsbA in a Lipid Environment Investigated by Small-Angle Scattering Using Stealth Carrier Nanodiscs | 2018 | I Josts, J Nitsche, S Maric, HD Mertens, M Moulin- Structure, 2018 - Elsevier | are slightly apart, rather than in contact, as seen in the closed structure (Figure 3 2005) and a single MsbA monomer (Figure 4). We imposed several structural restraints, assuming an overall confirmation as observed for P-glycoprotein (Szewczyk et al., 2015) ( PDB : 4Q9H) and |
| 6 | 7k45 | - | https://www.science.org/doi/abs/10.1126/science.abm5835 | SARS-CoV-2 Beta variant infection elicits potent lineage-specific and cross-reactive antibodies | 2022 | SM Reincke, M Yuan, HC Kornau, VM Corman- Science, 2022 - science.org | structural basis of this public broadly reactive clonotype, we determined crystal structures of We compared the structures of CS44 and CV07-287 with other published VH1-58 antibodies... Structures of VH1-58 antibodies from other studies are shown for comparison, including COVOX-253 (PDB 7BEN), S2E12 (PDB 7K45), |
| 7 | 6wpt | 6wps | https://pubs.acs.org/doi/abs/10.1021/acs.jctc.0c01144 | Structure, Dynamics, Receptor Binding, and Antibody Binding of the Fully Glycosylated Full-Length SARS-CoV-2 Spike Protein in a Viral Membrane | 2021 | YK Choi, Y Cao, M Frank, H Woo, SJ Park- Journal of chemical, 2021 - ACS Publications | The spike (S) protein of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) mediates host cell entry by binding to angiotensin-converting enzyme 2 (ACE2) and is considered the major target for drug and vaccine development. We previously built fully glycosylated full-length SARS-CoV-2 S protein models in a viral membrane ... In the cryo-EM structure of the S trimer in the complex with the S309 antibody (PDB ids: 6WPS and 6WPT(51)), S309 interacts with the glycan attached to N343. |
| 8 | 4ixo | - | https://pubs.acs.org/doi/abs/10.1021/acs.chemrev.2c00106 | Designing Artificial Metalloenzymes by Tuning of the Environment beyond the Primary Coordination Sphere | 2022 | C Van Stappen, Y Deng, Y Liu, H Heidari- Chemical, 2022 - ACS Publications | structure of the active site of cytochrome c peroxidase ( PDB structure of the active site of the F43H/H64L Mb mutant ( PDB bound Ni 2+ ( PDB ID: 4IXO ) and (f) Co 2+ ( PDB ID: 4IWW). |
| 9 | 4odj | - | https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006483 | A benchmark driven guide to binding site comparison: An exhaustive evaluation using tailor-made data sets (ProSPECCTs) | 2018 | C Ehrt, T Brinkjost, O Koch- PLoS computational biology, 2018 - journals.plos.org | In parallel with the ever increasing number of available protein structures in the Protein Data Bank ( PDB )[1], various in silico techniques were developed to apply this structural knowledge[2]. In addition to molecular docking, structure -based pharmacophore searches, and |
| 10 | 6x79 | - | https://pubs.acs.org/doi/abs/10.1021/acsomega.0c03512 | Characterization of the SARS-CoV-2 S protein: biophysical, biochemical, structural, and antigenic analysis | 2020 | NG Herrera, NC Morano, A Celikgil, GI Georgiev- ACS, 2020 - ACS Publications | need to produce large quantities of high-quality SARS-CoV-2 Spike (S) protein for use in both clinical and basic science settings. To address this need, we have evaluated the expression and purification of two previously reported S protein constructs in Expi293F and ExpiCHO-S cells... In nine structures that align well in this region (conformation 1: 6VXX, 6X29, 6X2C, 6X79, 6ZOX, 6ZOY, 6ZP0, 6ZP1, 6ZWV), the amino acid segment 621–640 was not modeled, presumably due to disorder |