We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7RA8 | 2021 | 13 |
| 4O3V | 2014 | 13 |
| 3GVG | 2009 | 13 |
| 3KHW | 2010 | 12 |
| 7SO9 | 2022 | 12 |
| 3F9I | 2008 | 12 |
| 7KI4 | 2021 | 12 |
| 6Q06 | 2020 | 12 |
| 3S4K | 2011 | 12 |
| 7KI6 | 2021 | 12 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6wps | 6vxx | https://academic.oup.com/nar/article-abstract/49/D1/D282/5901966 | CoV3D: a database of high resolution coronavirus protein structures | 2021 | R Gowthaman, JD Guest, R Yin- Nucleic acids, 2021 - academic.oup.com | (A) Visualization of the superposed spike RBD complexes with antibody S309 ( PDB code 6WPS ) ( 20 ) and (B) A trimeric spike structure in RBD-closed conformation ( 5 ) ( PDB code 6VXX Park YJ, Tortorici MA, Wall A., McGuire AT and Veesler D. (2020) Structure , Function, and |
| 2 | 3f9i | 3grp | https://www.cell.com/cell-chemical-biology/pdf/S1074-5521(15)00442-1.pdf | Human ISPD is a cytidyltransferase required for dystroglycan O-mannosylation | 2015 | M Riemersma, DS Froese, W van Tol, UF Engelke- Chemistry & biology, 2015 - cell.com | To provide molecular insight into hISPD properties, we determined the crystal structure of structure factors have been deposited with the PDB under the accession code PDB : 4CVH. Structure similarity of hISPD C-terminal domain, identified using DALI 3f9i 11.7 3.3 137 220 12 FabG R. prowazekii ... 3grp 11.4 3.2 131 209 15 B. henseliae |
| 3 | 4odj | - | https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006483 | A benchmark driven guide to binding site comparison: An exhaustive evaluation using tailor-made data sets (ProSPECCTs) | 2018 | C Ehrt, T Brinkjost, O Koch- PLoS computational biology, 2018 - journals.plos.org | In parallel with the ever increasing number of available protein structures in the Protein Data Bank ( PDB )[1], various in silico techniques were developed to apply this structural knowledge[2]. In addition to molecular docking, structure -based pharmacophore searches, and |
| 4 | 6vyb | - | https://www.tandfonline.com/doi/abs/10.1080/07391102.2020.1778537 | Ethnomedicines of Indian origin for combating COVID-19 infection by hampering the viral replication: using structure-based drug discovery approach | 2021 | S Alagu Lakshmi, RMB Shafreen, A Priya- Structure and, 2021 - Taylor & Francis | CoV-2 main protease ( PDB ID: 5R82. pdb ), spike protein ( PDB ID: 6VYB . pdb ) and human In order to minimize the energy, PDB structures of the target proteins were refined through for combating COVID-19 infection by hampering the viral replication: using structure -based drug |
| 5 | 5u25 | - | https://www.mdpi.com/2077-0383/8/12/2117 | FAD/NADH Dependent Oxidoreductases: From Different Amino Acid Sequences to Similar Protein Shapes for Playing an Ancient Function | 2019 | L Trisolini, N Gambacorta, R Gorgoglione- Journal of Clinical, 2019 - mdpi.com | Here, we present a structural comparative analysis showing that the investigated flavoprotein oxidoreductases have a highly similar overall structure , although the investigated Similarly, AIF-crystallized structure hosts a FAD and two NADH molecules (4bur. pdb , [26]) and |
| 6 | 4wny | - | https://www.sciencedirect.com/science/article/pii/S0065216417300424 | Twenty-Five Years of Investigating the Universal Stress Protein: Function, Structure, and Applications | 2018 | AC Vollmer, SJ Bark- Advances in applied microbiology, 2018 - Elsevier | Since the initial discovery of universal stress protein A (UspA) 25 years ago, remarkable advances in molecular and biochemical technologies have revolutionized our understanding of biology. Many studies using these technologies have focused on characterization of the uspA gene and Usp-type proteins. These studies have identified t... Universal stress protein 4WNY B. pseudomallei Abendroth, Dranow, Lorimer, and Edwards (2008) |
| 7 | 6mg6 | - | https://www.tandfonline.com/doi/abs/10.1080/07388551.2020.1827367 | Nitrilase: a promising biocatalyst in industrial applications for green chemistry | 2021 | JD Shen, X Cai, ZQ Liu, YG Zheng- Critical Reviews in, 2021 - Taylor & Francis | 6I00), Saccharomyces cerevisiae ( PDB : 4H5U and 1F89), Pyrococcus abyssi ( PDB : 3KLC), Helicobacter pylori ( PDB : 6MG6 ) and Synechocystis ( PDB : 3WUY) has been obtained However, with most of the nitrilases, the crystal structure had been resolved, came from eukaryotes |
| 8 | 6nb3 | - | https://advances.sciencemag.org/content/7/1/eabe5575.abstract | Conformational dynamics of SARS-CoV-2 trimeric spike glycoprotein in complex with receptor ACE2 revealed by cryo-EM | 2021 | C Xu, Y Wang, C Liu, C Zhang, W Han- Science, 2021 - advances.sciencemag.org | For the FP region, we first built the homology model by the Modeller tool within Chimera by using the MERS-CoV S structure (PDB: 6NB3) as template (2, 58, 59) and then used Rosetta to refine this region against the density map |
| 9 | 6wpt | - | https://advances.sciencemag.org/content/7/16/eabf3671?utm_campaign=TrendMD_1&utm... | The SARS-CoV-2 spike variant D614G favors an open conformational state | 2021 | RA Mansbach, S Chakraborty, K Nguyen- Science, 2021 - advances.sciencemag.org | 1 Structural representation of the Spike protein. (A) The Spike complex is shown in the all-down conformation. Its S1 and S2 subunits are depicted in red and blue We display the domains highlighted in the Spike structure , shown from two different perspectives ... S309 Fab binding to up-RBD was modeled by rigid-body alignment to closed-RBD and Fab interactions from PDB structure 6WPT (21), using the backbone of residues 331 to 527 for least squares fitting. |
| 10 | 6nb7 | - | https://www.mdpi.com/796898 | Nicotinic cholinergic system and COVID-19: in silico identification of an interaction between SARS-CoV-2 and nicotinic receptors with potential therapeutic targeting | 2020 | K Farsalinos, E Eliopoulos, DD Leonidas- International journal of, 2020 - mdpi.com | amino acid transporter ( PDB id: 6M18), the structure of a neutralizing to ( PDB id: 6NB7 ) and the extracellular domain of the nAChR 9 subunit in complex with -bungarotoxin ( PDB id: |