We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 9PYV | 2025 | 0 |
| 9Q0D | 2025 | 0 |
| 9Q5C | 2025 | 0 |
| 9Y4S | 2025 | 0 |
| 7T35 | 2021 | 0 |
| 7T29 | 2021 | 0 |
| 7T24 | 2021 | 0 |
| 7SZV | 2021 | 0 |
| 9Y4U | 2025 | 0 |
| 7SZS | 2021 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4o5h | 4o6r, 4lih, 4u3w, 3ek1, 3i44 | http://www.ppgeq.propesp.ufpa.br/ARQUIVOS/dissertacoes/2017/PPGEQ-2017/Fabio%20B... | ESTUDO COMPUTACIONAL DA ENZIMA ALDEHYDE DEHYDROGENASE DE BIXA ORELLANA (URUCUM) E DOS LIGANTES ALDEÍDO DE BIXINA E NORBIXINA SOB A INFLUÊNCIA DO COFATOR NAD. | 2017 | Fábio Bruno Silva de Souza - ppgeq.propesp.ufpa.br | Therefore, the 3D structure of the PDB Banco de Dados de Protenas (Protein Data Bank) RMN Ressonncia Magntica Nuclear FASTA Arquivo RCSB Site de investigao de Tecnologias para Bioinformtica Estrutural (Research Collaboratory for Structural Bioinformatics) G |
| 2 | 3i4e | - | http://www.diva-portal.org/smash/record.jsf?pid=diva2:1134642 | Importance of the Clr2 protein in heterochromatin formation in the fission yeast Schizosaccharomyces pombe | 2017 | D Steinhauf - 2017 - diva-portal.org | ... The exact function of Clr2 is unknown but the 3D crystal structure of Clr2 reveals four distinct domains; an N-terminal domain ... The second internal domain resembles a bromo-adjacent homology (BAH) domain, and 3D- structures show the domain interacting with Clr1 through a ... Finally, the Isocitrate Lyase (PDB entry: 3I4E) was used for the modeling of C2SM3. |
| 3 | 5woq | - | http://ijiset.com/vol5/v5s3/IJISET_V5_I03_01.pdf | In-Silico Structural & Molecular Characterization Of Clgr From Mycobacterium Tuberculosis | 2018 | YN Joshi, RD Salunkhe - ijiset.com | was obtained through SWISS MODEL server using resolution 1.8 A structure of ClgR from Mycobacterium smegmatis ( PDB Id: 5woq .2.A K, Bordoli L, Kopp J, Schwede T. The SWISSMODEL Workspace: A web-based environment for protein structure homology modelling |
| 4 | 3r1i | - | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3867646/ | Insilico Characterization and Homology Modeling of Arabitol Dehydrogenase (ArDH) from Candida albican | 2013 | MW Sarwar, IB Saleem, A Ali, F Abbas - Bioinformation, 2013 - ncbi.nlm.nih.gov | … used for multiple sequence alignment of ArDH with other dehydrogenases from Mycobacterium marinum (PDB Id: 3R1I), Candida parapsilosis ... |
| 5 | 4fur | - | http://bioinformatics.oxfordjournals.org/content/early/2016/03/28/bioinformatics... | Tally: a scoring tool for boundary determination between repetitive and non-repetitive protein sequences | 2016 | FD Richard, R Alves, AV Kajava - Bioinformatics, 2016 - Oxford Univ Press | ... Examples of proteins where TRs found in sequence either correspond to (A) presence (PDBcode 3VN3 (Kondo et al., 2011)) or (B) absence (4FUR) of TRs ... both in sequence and in structure(TR-SS) and 'false' TRs only found in sequence but not in the structure (TR-SNS ... |
| 6 | 4kzk | - | https://www.preprints.org/manuscript/201909.0313 | Structural Flexibility of Peripheral Loops and Extended C-Term Domain of Short Length Substrate Binding Protein from Rhodothermus marinus | 2019 | JE Bae, IJ Kim, Y Xu, KH Nam - 2019 - preprints.org | 120 analysis and substrate docking studies using previously reported crystal structure of SBP ( PDB 121 code 5Z6V) as starting point model structure Among them, 9 models ( PDB code: 123 2QH8, 3LFT, 5ER3, 6DSP, 5BRA, 3KSM, 2DRI, 5DTE, 4KZK , 4RS3, 8ABP) with |
| 7 | 4lfy | - | https://tspace.library.utoronto.ca/handle/1807/70867 | STRUCTURE DETERMINATION AND BIOCHEMICAL CHARACTERIZATION OF NOVEL HUMAN UBIQUITIN-LIKE DOMAINS. | 2015 | RS Doherty - 2015 - tspace.library.utoronto.ca | ... Table 3.2: Secondary structure elements of NFATc2IP, ubiquilin-1, ubiquitin and SUMO1/2/3. ...Table 3.4: UIM:ubiquitin complexes deposited in the PDB, along with UIM sequence ... ubiquitin,along with the number of supporting publications and supporting structural complexes that ... |
| 8 | 5bnt | - | https://onlinelibrary.wiley.com/doi/abs/10.1107/S2053230X17017241 | Structure of aspartate semialdehyde dehydrogenase from Francisella tularensis | 2018 | NJ Mank, S Pote, KA Majorek- Section F: Structural, 2018 - Wiley Online Library | NADP+ (yellow spheres) is modeled using the structure of H. influenzae ASADH ( PDB PDB entry 3pzr; Pavlovsky et al., 2012), Pseudomonas aeruginosa ( PDB entry 5bnt ; Seattle Structural entry 1t4b; Nichols et al., 2004) and Haemophilus influenzae (HiASADH; PDB entry 1pqu |
| 9 | 5dvw | 3tcq | http://www.worldscientific.com/doi/abs/10.1142/S1793048017500060 | Interplay Among Constitutes of Ebola Virus: Nucleoprotein, Polymerase L, Viral Proteins | 2017 | M Zhang, P He, J Su, DT Singh, H Su - Biophysical Reviews and , 2017 - World Scientific | ... interacts with the C-terminal domain of NP to stabilize the overall virion structure (shown in ... Majorfunctions of these structural proteins are elaborated in the boxes.1,10,56 (b) Crystal ... of Ebola viralproteins: NP (RCSB PDB:4ZTI)96; VP30 protein (RCSB PDB:5DVW)97; VP35 ... |
| 10 | 3eiz | 3i4t | http://www.turkjbiochem.com/2014/435-442.Ek2.pdf | High pKa variability of cysteine residues in structural databases and the effect of H-bond contributions | 2014 | SM Marino, İ Soylu - Türk Biyokimya Dergisi [Turkish Journal of …, 2014 - turkjbiochem.com | ... High pKa variability of cysteine residues in structural ... RESULTS of ppka3 on PDB-crystal datasetprot=protein name res_num=residue number H-bond=hydrogen bond contribution to pKaprediction (pKa) Coul=electrostatics (from Coulombic interactions) contribution to pKa ... |