We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3IXC | 2009 | 12 |
| 3ENK | 2008 | 12 |
| 3I3R | 2009 | 12 |
| 3L56 | 2010 | 12 |
| 4LGV | 2013 | 12 |
| 3H81 | 2009 | 12 |
| 7SO9 | 2022 | 12 |
| 3UVE | 2011 | 12 |
| 7KI6 | 2021 | 12 |
| 4G50 | 2012 | 12 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 7m53 | - | https://www.nature.com/articles/s42003-022-03262-7 | Structural definition of a pan-sarbecovirus neutralizing epitope on the spike S2 subunit | 2022 | NK Hurlburt, LJ Homad, I Sinha, MF Jennewein- Communications, 2022 - nature.com | a Structural alignment of stem helix peptides to CV3-25 Fab and B6 Fab (PDBid: 7M53 ) shown The CV3-25/peptide structure has been deposited in the PDB (7RAQ). The negative stain |
| 2 | 6wpt | 7jw0, 7jv6, 7k4n, 7k43, 7jvc | https://www.nature.com/articles/s41422-021-00487-9 | Structural basis for bivalent binding and inhibition of SARS-CoV-2 infection by human potent neutralizing antibodies | 2021 | R Yan, R Wang, B Ju, J Yu, Y Zhang, N Liu, J Wang- Cell research, 2021 - nature.com | Neutralizing monoclonal antibodies (nAbs) to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) represent promising candidates for clinical intervention against coronavirus disease 2019 (COVID-19). We isolated a large number of nAbs from SARS-CoV-2-infected ... Besides, there are some special antibodies that can compete ACE2 binding while bind to RBD with different patterns. We assigned these antibodies into class IV which contains S309 (PDB code: 6WPT), C110 (PDB code: 7K8V) and C135 (PDB code |
| 3 | 6nb7 | - | https://www.mdpi.com/796898 | Nicotinic cholinergic system and COVID-19: in silico identification of an interaction between SARS-CoV-2 and nicotinic receptors with potential therapeutic targeting | 2020 | K Farsalinos, E Eliopoulos, DD Leonidas- International journal of, 2020 - mdpi.com | amino acid transporter ( PDB id: 6M18), the structure of a neutralizing to ( PDB id: 6NB7 ) and the extracellular domain of the nAChR 9 subunit in complex with -bungarotoxin ( PDB id: |
| 4 | 5bt8 | - | https://royalsocietypublishing.org/doi/abs/10.1098/rsob.200302 | Phosphoglycerate kinase: structural aspects and functions, with special emphasis on the enzyme from Kinetoplastea | 2020 | M Rojas-Pirela, D Andrade-Alvirez- Open, 2020 - royalsocietypublishing.org | bacteria, PGK, monomer, open, , 6I06, [39]. Acinetobacter baumannii, bacteria, PGK, monomer, , , 5BT8 , Fairman et al. (NA) Figure 3. Three-dimensional structure of phosphoglycerate kinase. (a) Ribbon representation of the overall structure of pig muscle PGK ( PDB : 1HDI) |
| 5 | 7ly3 | 7ral | https://www.cell.com/cell-reports/pdf/S2211-1247(22)00798-7.pdf | Cryo-EM structures of SARS-CoV-2 Omicron BA. 2 spike | 2022 | V Stalls, J Lindenberger, SMC Gobeil, R Henderson- Cell Reports, 2022 - cell.com | The structures used in this analysis included PDB IDs 7KE8 (G6141), 7KE6 (G6142), 7KE7 (G6143), 7KE4 (G6144), 7LWS (Alpha), 7LYL (Beta), 8CSA (TM), 7LWL (Mk1), 7LWI (Mk2), |
| 6 | 7lxx | 7ly3, 7ly2, 7lxy, 7ly0 | https://link.springer.com/article/10.1007/s00018-021-04008-0 | Structural and functional insights into the spike protein mutations of emerging SARS-CoV-2 variants | 2021 | D Gupta, P Sharma, M Singh, M Kumar- Cellular and Molecular, 2021 - Springer | The postfusion state is characterized by the formation of a needle-like structure in which both FP and TM associate together ( PDB id: 6M3W) (Fig. 2E). The postfusion trimer state is |
| 7 | 5udf | - | https://www.nature.com/articles/s41594-021-00573-x | Structural basis for bacterial lipoprotein relocation by the transporter LolCDE | 2021 | X Tang, S Chang, K Zhang, Q Luo, Z Zhang- Nature Structural &, 2021 - nature.com | Advertisement. Advertisement. Nature Structural & Molecular Biology. View all journals; Search; My Account Login. Explore content; Journal information; Publish with us Structural basis for bacterial lipoprotein relocation by the transporter LolCDE |
| 8 | 7k43 | 7k4n | https://pubs.acs.org/doi/abs/10.1021/acs.jpcb.1c00395 | Integrated Biophysical Modeling of the SARS-CoV-2 Spike Protein Binding and Allosteric Interactions with Antibodies | 2021 | GM Verkhivker, L Di Paola- The Journal of Physical Chemistry B, 2021 - ACS Publications | Structural and biochemical studies of the severe acute respiratory syndrome (SARS)-CoV-2 spike glycoproteins and complexes with highly potent antibodies have revealed multiple conformation-dependen... |
| 9 | 3rd5 | - | https://www.hindawi.com/journals/tswj/2014/971258/ | Prediction and analysis of surface hydrophobic residues in tertiary structure of proteins | 2014 | S Malleshappa Gowder, J Chatterjee- The Scientific World, 2014 - hindawi.com | After assigning the confidence score, we checked out accuracy of results based on its observed result from NACCESS server which is based on PDB structural results. Over 76% of |
| 10 | 6cfp | - | https://www.tandfonline.com/doi/abs/10.1080/07391102.2020.1806112 | New anti-viral drugs for the treatment of COVID-19 instead of favipiravir | 2020 | A Akta, B Tzn, R Aslan, K Sayin- Biomolecular Structure, 2020 - Taylor & Francis | According to Table 2, the 6CFP protein is not inhibited by any ligands RNA polymerase proteins with PDB IDs of 6NUR and 6NUS were reported in late 2019 and early In this calculation, the ligand and protein are flexible and solvent molecules surround the entire structure |