We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3QHD | 2011 | 12 |
| 4G7F | 2012 | 11 |
| 3MX6 | 2010 | 11 |
| 2KN9 | 2009 | 11 |
| 5CY4 | 2015 | 11 |
| 3NRR | 2010 | 11 |
| 5KHA | 2016 | 11 |
| 3GKA | 2009 | 11 |
| 5B8I | 2015 | 11 |
| 3RR2 | 2011 | 11 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5idv | - | https://www.sciencedirect.com/science/article/pii/S0969212618301710 | Conformational States of ABC Transporter MsbA in a Lipid Environment Investigated by Small-Angle Scattering Using Stealth Carrier Nanodiscs | 2018 | I Josts, J Nitsche, S Maric, HD Mertens, M Moulin- Structure, 2018 - Elsevier | are slightly apart, rather than in contact, as seen in the closed structure (Figure 3 2005) and a single MsbA monomer (Figure 4). We imposed several structural restraints, assuming an overall confirmation as observed for P-glycoprotein (Szewczyk et al., 2015) ( PDB : 4Q9H) and |
| 2 | 7k45 | - | https://www.science.org/doi/abs/10.1126/science.abm5835 | SARS-CoV-2 Beta variant infection elicits potent lineage-specific and cross-reactive antibodies | 2022 | SM Reincke, M Yuan, HC Kornau, VM Corman- Science, 2022 - science.org | structural basis of this public broadly reactive clonotype, we determined crystal structures of We compared the structures of CS44 and CV07-287 with other published VH1-58 antibodies... Structures of VH1-58 antibodies from other studies are shown for comparison, including COVOX-253 (PDB 7BEN), S2E12 (PDB 7K45), |
| 3 | 3kc6 | 3khw | https://link.springer.com/chapter/10.1007/978-981-10-8456-0_5 | Structure and Function of Influenza Virus Ribonucleoprotein | 2018 | CY Lo, YS Tang, PC Shaw- Virus Protein and Nucleoprotein Complexes, 2018 - Springer | These structures include PDB : 2VY7, 2VY8, 3KC6 , 3KHW, 2GMO (solution structure of NLS-domain). Structures composing of both domains are also available ( PDB : 2VY6, 3CW4) (Tarendeau et al. 2007; Tarendeau et al. 2008; Kuzuhara et al. 2009; Yamada et al |
| 4 | 4iwh | - | https://pubs.acs.org/doi/abs/10.1021/acscentsci.8b00912 | Predicting Protein Complex Structure from Surface-Induced Dissociation Mass Spectrometry Data | 2019 | JT Seffernick, SR Harvey, VH Wysocki- ACS Central, 2019 - ACS Publications | from which data have been favorably compared to known crystal structures on many along with other bioanalytical MS and dissociation techniques, yields useful structural information, the sparse, not allowing for an unambiguous determination of the protein complex structure... Additionally, the Pnear also improved for 56/57 ideal cases (except 4IWH) when SID data were used, as shown in Figure S3A. |
| 5 | 3hm0 | - | http://onlinelibrary.wiley.com/doi/10.1002/pro.417/full | Thioesterases: A new perspective based on their primary and tertiary structures | 2010 | DC Cantu, Y Chen, PJ Reilly - Protein Science, 2010 - Wiley Online Library | ... If a crystal structure is known, the Protein Data Bank (PDB, http://www.rcsb.org) accession code also appears. ThYme will be continuously updated: the content of each family will grow as GenBank, UniProt, and PDB do. ... Family, Fold, RMSD ave (?), P ave (%), PDB files. ... |
| 6 | 3uf8 | 4ijn, 4lfy, 4l83, 4i1i, 4lsm, 4k73, 4ecp, 4gnv, 4kzk, 3uw1, 4e4t, 3v2i, 4jqp, 3uw3, 4f3n, 3vav, 4lhr, 3ecd, 3quv, 3qh8, 3cxk, 3mxu, 3oc9, 3pme, 3nfw | https://scripts.iucr.org/cgi-bin/paper?xh5047 | Identifying and quantifying radiation damage at the atomic level | 2015 | M Gerstel, CM Deane, EF Garman- Journal of synchrotron radiation, 2015 - scripts.iucr.org | PDB structures contain occupancy values outside the valid probability range: the structure variance of different packing density metrics applied to the 2,704 selected PDB structures . |
| 7 | 6vxx | - | https://pubs.acs.org/doi/abs/10.1021/acsmedchemlett.0c00410 | Structural impact of mutation D614G in SARS-CoV-2 spike protein: enhanced infectivity and therapeutic opportunity | 2020 | A Fernndez- ACS medicinal chemistry letters, 2020 - ACS Publications | Figure 1. Structural and epistructural interactions at the S1/S2 interface in the spike protein of SARS-CoV-2. (a) Positioning of D614 in the S1 chain (magenta) relative to T859 in the S2 chain (blue) at the S1/S2 interface for the spike protein structure reported in PDB6VXX |
| 8 | 4wi1 | - | https://www.sciencedirect.com/science/article/pii/S135964461730538X | Drug targeting of one or more aminoacyl-tRNA synthetase in the malarial parasite Plasmodium falciparum | 2018 | M Yogavel, R Chaturvedi, P Babbar, N Malhotra- Drug discovery today, 2018 - Elsevier | HF, yellow PDB ID: 4YDQ), glyburide (violet, PDB ID: 5IFU), TCMDC-124506 (orange, PDB ID: 4WI1 ) and modeled Takeda compound B (green, PDB ID: 5VAD Among these, benzoxaboroles target the editing site of Pf-LRS cyto effectively and the crystal structure for the |
| 9 | 2ke0 | - | http://www.ingentaconnect.com/content/ben/cmc/2010/00000017/00000015/art00005 | In silico prediction of binding sites on proteins | 2010 | S Leis, S Schneider, M Zacharias - Current medicinal chemistry, 2010 - ingentaconnect.com | ... 15 Leis et al. Table 3. Protein Test Structures pdb entry molecule state ligand Rmsd (?)b 2ANO E.coli dihydrofolate reductase bound Inh. MS-SH08-17 0 ... 1FKS_2VCD 1FKS based on 2VCD structure homology --- 2.3 1FKS_2KE0 1FKS based on 2KE0 structure homology --- 2.6 ... |
| 10 | 4ylg | - | http://www.nature.com/nature/journal/vaop/ncurrent/full/nature16940.html | Cryo-EM structure of the yeast U4/U6. U5 tri-snRNP at 3.7 resolution | 2016 | THD Nguyen, WP Galej, X Bai, C Oubridge - Nature, 2016 - nature.com | ... 4: Secondary structure of the snRNAs in tri-snRNP. ... S. pombe ILS spliceosomal complex 19, 20(red, PDB 3JB9), was overlaid on GDPs found in other guanine-nucleotide binding proteins(grey, PDB coordinates: 1DAR, 2E1R, 2WRI, 1Z0I, 5CA8, 1XTQ, 4YLG, 1SF8, 5BXQ ... |