We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3E5B | 2008 | 10 |
| 2KN9 | 2009 | 10 |
| 3Q8H | 2011 | 10 |
| 7N8I | 2021 | 10 |
| 3NRR | 2010 | 10 |
| 3NFW | 2010 | 10 |
| 3GAF | 2009 | 10 |
| 5UPG | 2017 | 10 |
| 7LXZ | 2021 | 10 |
| 3N58 | 2010 | 10 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4qgr | 3njd | http://onlinelibrary.wiley.com/doi/10.1002/prot.25007/full | Prediction of homoprotein and heteroprotein complexes by protein docking and templatebased modeling: A CASPCAPRI experiment | 2016 | MF Lensink, S Velankar - Proteins: Structure, , 2016 - Wiley Online Library | ... Next article in Early View: Critical assessment of methods of protein structure prediction: Progressand new directions in round XI. ... E-mail: marc.lensink@univ-lille1.fr or Shoshana J. Wodak; VIBStructural Biology Research Center, VUB, 1050 Brussels, Belgium. ... |
| 2 | 3ix6 | 4whx, 3qat | https://journals.asm.org/doi/abs/10.1128/MMBR.00029-16 | The blueprint of a minimal cell: MiniBacillus | 2016 | DR Reu, FM Commichau, J Gundlach- Microbiology and, 2016 - Am Soc Microbiol | SUMMARY Bacillus subtilis is one of the best-studied organisms. Due to the broad knowledge and annotation and the well-developed genetic system, this bacterium is an excellent for ... TABLE 2 The complete gene set of MiniBacillus thyB BSU21820 No 2.1.1.45 3IX6 Brucella melitensis |
| 3 | 3o0h | - | https://link.springer.com/article/10.1007/s00299-021-02717-1 | Exploration of glutathione reductase for abiotic stress response in bread wheat (Triticum aestivum L.) | 2021 | A Kaur, S Tyagi, K Singh, SK Upadhyay- Plant Cell Reports, 2021 - Springer | point in view we studied the secondary and tertiary structure of two TaGR proteins (TaGR1-D -A showed the best PDB hit with the GR of Bartonella henselae ( 3O0H ). The predicted C- |
| 4 | 7lxy | - | https://www.nature.com/articles/s41467-022-32262-8 | SARS-CoV-2 variants of concern: spike protein mutational analysis and epitope for broad neutralization | 2022 | D Mannar, JW Saville, Z Sun, X Zhu, MM Marti- Nature, 2022 - nature.com | structure , ACE2 affinity, and evasion of antibodies afforded by previously emerged variant spikes, providing a general structural coordinates ( PDB code 7MJG, 7MJM, 7MJN, 7LXY , 7K43 |
| 5 | 5b8i | - | https://journals.asm.org/doi/abs/10.1128/aac.01627-18 | In Vitro and In Vivo Assessment of FK506 Analogs as Novel Antifungal Drug Candidates | 2018 | Y Lee, KT Lee, SJ Lee, JY Beom- Antimicrobial agents, 2018 - Am Soc Microbiol | However, the structure of the fungal ternary complex from Coccidioides immitis has recently been reported ( PDB accession number 5B8I ), which would facilitate the rational design of FK506 analogs that can discriminate human and fungal calcineurins |
| 6 | 3kc6 | 3khw | https://link.springer.com/chapter/10.1007/978-981-10-8456-0_5 | Structure and Function of Influenza Virus Ribonucleoprotein | 2018 | CY Lo, YS Tang, PC Shaw- Virus Protein and Nucleoprotein Complexes, 2018 - Springer | These structures include PDB : 2VY7, 2VY8, 3KC6 , 3KHW, 2GMO (solution structure of NLS-domain). Structures composing of both domains are also available ( PDB : 2VY6, 3CW4) (Tarendeau et al. 2007; Tarendeau et al. 2008; Kuzuhara et al. 2009; Yamada et al |
| 7 | 4q6u | - | https://www.sciencedirect.com/science/article/pii/S1369527421000102 | PAS domains in bacterial signal transduction | 2021 | EC Stuffle, MS Johnson, KJ Watts- Current Opinion in Microbiology, 2021 - Elsevier | ad) PAS monomer structures : (a) The PAS structural prototype photoactive dimer bound to heme cofactor (Fe 3+ , PDB : 4HI4, [25]) and a liganded monomer with cyanomet heme (Fe 3+ -CN, PDB : 3VOL, [31 For clarity, b-type heme is only shown bound to the liganded structure |
| 8 | 4iwh | - | https://pubs.acs.org/doi/abs/10.1021/acscentsci.8b00912 | Predicting Protein Complex Structure from Surface-Induced Dissociation Mass Spectrometry Data | 2019 | JT Seffernick, SR Harvey, VH Wysocki- ACS Central, 2019 - ACS Publications | from which data have been favorably compared to known crystal structures on many along with other bioanalytical MS and dissociation techniques, yields useful structural information, the sparse, not allowing for an unambiguous determination of the protein complex structure... Additionally, the Pnear also improved for 56/57 ideal cases (except 4IWH) when SID data were used, as shown in Figure S3A. |
| 9 | 3kc6 | 3khw | https://link.springer.com/chapter/10.1007/82_2014_386 | Molecular determinants of pathogenicity in the polymerase complex | 2014 | G Gabriel, E Fodor- Influenza Pathogenesis and Control-Volume I, 2014 - Springer | were generated with PyMOL using the following PDB accession numbers: PA endonuclease Structures were generated using the following PDB accession numbers: 3KC6 for H5N1 |
| 10 | 3uam | - | http://www.jbc.org/content/288/18/12828.short | Crystal structure and computational characterization of the lytic polysaccharide monooxygenase GH61D from the basidiomycota fungus Phanerochaete chrysosporium | 2013 | M Wu, GT Beckham, AM Larsson, T Ishida? - Journal of Biological Chemistry, 2013 - ASBMB | ... date, there are five LPMO structures from five different fungal GH61s available: H. jecorina GH61B (Protein Data Bank (PDB) code 2VTC ... PDB code 2XWX) (17), Enterococcus faecalis CBM33 (PDB code 4A02) (18), and Burkholderia pseudomallei CBM33 (PDB code 3UAM ... |