We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5K9Z | 2016 | 0 |
| 5KEU | 2016 | 0 |
| 5KF0 | 2016 | 0 |
| 4H3Y | 2012 | 0 |
| 5KOB | 2016 | 0 |
| 5KWV | 2016 | 0 |
| 5T3Y | 2016 | 0 |
| 5T5Q | 2016 | 0 |
| 8SAE | 2023 | 0 |
| 5TE9 | 2016 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3njd | 3svk | http://search.proquest.com/openview/ee126ccbca4d4d8958dd7f9217f8fdd2/1?pq-origsi... | Protein 3-D Structure Representation for Alignment-Free Comparison and Structural Motif Discovery of Proteins, and Hierarchical Protein Classification | 2015 | S Singh - 2015 - search.proquest.com | ... a lot more diversity and complexity, rather than having a simple, unique rigid structure, and that ...of a growing number of methods, there is no widely accepted 3-D structural alignment method.None of the current methods for searching PDB are guaranteed to find true matches in ... |
| 2 | 3p4i | 4dq8 | http://uir.unisa.ac.za/handle/10500/19148 | Mycobacterium tuberculosis kinases as potential drug targets: production of recombinant kinases in E. coli for functional characterization and enzyme inhibition | 2015 | V Lukman - 2015 - uir.unisa.ac.za | ... Other mycobacterial AKs have been deposited in the Protein Data Bank (www.pdb.org), with high levels of similarity to the putative Mtb AK (M. avum, pdb 3P4I at 74.4% and M. marinum pdb 4DQ8 at 75.1%). ... |
| 3 | 3sdw | 3sgw, 3qd5, 4em8, 3s5p | http://search.proquest.com/openview/d609872dcf4202be5c1c8582c3e46eb9/1?pq-origsi... | Evaluation of Trypanosoma brucei asparagine synthetase A and ribose 5-phosphate isomerase B as potential drug targets | 2015 | IMS Loureiro - 2015 - search.proquest.com | ... Figure 9. Licensed current therapies against HAT. (A) Structures of drugs used to treat. early and late stage disease. ... PARP procyclic acidic repetitive protein. PDB Protein Data Bank. ... molecules with a conserved core structure of glycosylphosphatidylinositol (GPI) anchored. ...Coccidioides immintis (PDB 3QD5, 3SDW and 3SGW) (Min et al, 2002), Anaplasma phagocytophilum (PDB 4EM8), Clostridium thermocellium (PDB 3PH3, 3PH4 3HEE, and 3HE8) (Jung et al, 2011), Giardia lamblia (PDB 3S5P) |
| 4 | 3qi6 | 3qhx | http://scripts.iucr.org/cgi-bin/paper?nw5049 | The hyperthermophilic cystathionine -synthase from the aerobic crenarchaeon Sulfolobus tokodaii: expression, purification, crystallization and structural insights | 2017 | D Sato, T Shiba, S Mizuno, A Kawamura - Section F: Structural , 2017 - scripts.iucr.org | ... E. Ahmed & S. Gourinath, unpublished work) and Mycobacterium ulcerans Agy99 (PDB entries 3qi6 and 3qhx ... of StCGS was solved by molecular replacement using E. coli CGS (PDB entry 1cs1 ...at basic pH and elevated temperature is caused by changes in the protein structure. ... |
| 5 | 4dq8 | 4ijn, 3p4i, 3r9p | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5517563/ | Investigation of pyrophosphate versus ATP substrate selection in the Entamoeba histolytica acetate kinase | 2017 | T Dang, C Ingram-Smith- Scientific Reports, 2017 - ncbi.nlm.nih.gov | ... ID 3P4I; Mycobacterium paratuberculosis, PDB ID 3R9P; Mycobacterium marinum PDB ID 4DQ8 . ... ACK structures were downloaded from Protein Data Bank ( PDB ): 4H0O (Entamoeba ... Structure superposition and modeling were performed using Accelrys Discovery Studio 3.5 ... |
| 6 | 3rd7 | 3u0a | http://pubs.acs.org/doi/abs/10.1021/acs.biochem.6b01049 | Mycobacteria encode active and inactive classes of TesB fatty-acyl CoA thioesterases revealed through structural and functional analysis | 2017 | CMD Swarbrick, GV Bythrow, DG Arago - Biochemistry, 2017 - ACS Publications | ... Our structural homology analysis revealed that at least one other TesB acyl-CoA thioesterasealso contains an Ala residue at the active site, while two other ... The TesB thioesterase from M. avium (MaTesB) is a 276-amino acid protein and shares a low level of sequence similarity with the homologous TesB thioesterases from ... the orthologous TesB thioesterase from M. avium (PDB entry 3RD7, 41%).. ... |
| 7 | 3uk1 | 3upt | http://scripts.iucr.org/cgi-bin/paper?tt5073 | High-resolution structures of Lactobacillus salivarius transketolase in the presence and absence of thiamine pyrophosphate | 2015 | P Lukacik, CMC Lobley, M Bumann - Section F: Structural , 2015 - scripts.iucr.org | ... In this work, we present high-resolution crystal structures of the L. salivarius UCC118 Tkt protein(LsTktA) in the presence and absence ... Burkholderia thailandensis (PDB entry 3uk1 ), B. pseudomallei (PDB entry 3upt ), ... |
| 8 | 4eff | 4ix8 | https://www.nature.com/srep/2016/160107/srep18880/full/srep18880.html | Crystal structures of Mycobacterium tuberculosis HspAT and ArAT reveal structural basis of their distinct substrate specificities | 2016 | N Nasir, A Anant, R Vyas, BK Biswal- Scientific reports, 2016 - nature.com | ... site residues of I aminotransferases across species, we performed a structure and sequence ... The source of each sequence and PDB ID are: Pyrococcus horikoshii ArAT (1DJU ... 8 , Paracoccus denitrificans ArAT (2AY1) 18 , Burkholderia pseudomallei ArAT ( 4EFF ), C. glutamicum ... |
| 9 | 4iuj | 4p9a | http://search.proquest.com/openview/e042d9cdc035342db038fc10db68a8fe/1?pq-origsi... | Computer-Aided Drug Discovery and Protein-Ligand Docking | 2015 | H Li - 2015 - search.proquest.com | ... In addition to PAC-PB1N structures, two apo crystal structures of PAC in the absence of PB1 have been reported recently [322]. The first is a 1.9Å resolution structure of H1N1 PAC (PDB ID: 4IUJ). The second is a 2.2Å resolution structure of H7N9 PAC (PDB ID: 4P9A)... |
| 10 | 3r9r | 5vev, 3lp8 | https://lra.le.ac.uk/handle/2381/42871 | Studying the mechanism and action of Purine biosynthesis enzymes in Mycobacterium Tuberculosis H37RV | 2018 | SJ Almehmadi - 2018 - lra.le.ac.uk | Structural determination of SAICARs in M. tuberculosis and refinement, results tetraacetic acid F1 forward primer Fc calculated structure factors Fo observed structure factors Fo-Fc OD optical density ORF open reading frame PCR polymerase chain reaction PDB protein Data |