We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5IFB | 2017 | 0 |
| 5IFC | 2017 | 0 |
| 5IFD | 2017 | 0 |
| 8SA9 | 2023 | 0 |
| 5IXU | 2016 | 0 |
| 5IZ4 | 2016 | 0 |
| 8SAA | 2023 | 0 |
| 8SAB | 2023 | 0 |
| 8SAC | 2023 | 0 |
| 5JSC | 2016 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4o3v | - | https://jcheminf.biomedcentral.com/articles/10.1186/s13321-019-0360-9 | Improved algorithms for quantifying the near symmetry of proteins: complete side chains analysis | 2019 | I Tuvi-Arad, G Alon- Journal of cheminformatics, 2019 - jcheminf.biomedcentral.com | model of allostery (also referred to as the symmetry model) [5]. Synthesizing a symmetric structure requires less is a characteristic of many protein structures [7]. Searching the Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB ) [8, 9] for |
| 2 | 4qtp | - | http://kjvr.org/upload/2015/06/25/20150625103448248200.pdf | Mycobacterium avium subsp. paratuberculosis 감염 초기 개체 검출을 위한항원 탐색 및 특성 분석 | 2015 | 박홍태， 박현의， 신민경， 조용일， 유한상 - Korean J Vet Res, 2015 - kjvr.org | ... MAP의 MAP0380 유전자가 coding하고 있는 anti-sigma factor antagonist protein(PDB ID: 4qtp,TM-score ... 1. Three-dimensional structure prediction using I-TASSER server. ... 백질은 MAP1204의p60 domain으로 나타났는데(PDB ID: 3i86, TM-score: 0.547), sequence identity가 100 ... |
| 3 | 3krb | - | https://repositorio.ul.pt/handle/10451/2032 | Methylglyoxal metabolism in Leishmania infantum | 2010 | LIS Barata - 2010 - repositorio.ul.pt | ...Besides the human enzyme, there are also accessible other aldose reductase structures from other organisms, including the protozoan Giardia lamblia (PDB entry 3KRB (Seattle Structural Genomics Center for Infectious Disease, to be published)) and the mammal Sus scrofa (PDB entry 1AH4 (Urzhumtsev et al. 1997)).. ... |
| 4 | 3i4e | - | http://www.diva-portal.org/smash/record.jsf?pid=diva2:1134642 | Importance of the Clr2 protein in heterochromatin formation in the fission yeast Schizosaccharomyces pombe | 2017 | D Steinhauf - 2017 - diva-portal.org | ... The exact function of Clr2 is unknown but the 3D crystal structure of Clr2 reveals four distinct domains; an N-terminal domain ... The second internal domain resembles a bromo-adjacent homology (BAH) domain, and 3D- structures show the domain interacting with Clr1 through a ... Finally, the Isocitrate Lyase (PDB entry: 3I4E) was used for the modeling of C2SM3. |
| 5 | 3l56 | - | http://www.springerlink.com/index/L53174W7H2780715.pdf | Molecular mechanisms of transcription and replication of the influenza A virus genome | 2011 | S Zhang, T Toyoda - Frontiers in Biology, 2011 - Springer | ... (b) The electrostatic potential of PB2 3/3 E627 was calculated using the GRASP program. Modified from Fig. 2 of Kuzuhara et al. (2009b). G: PB2 C-terminal NLS. PDB accession number:3L56. Figures were rendered in PyMOL (http://www.pymol.org/). ... |
| 6 | 4odj | - | http://geb.uni-giessen.de/geb/volltexte/2016/12297/ | Redox regulation of Plasmodium falciparum methionine adenosyltransferase and Mycetinis scorodonius DyP-type peroxidase 1 | 2016 | J Pretzel - 2016 - geb.uni-giessen.de | ... Since the crystal structure of PfalMAT is not yet available, we constructed a homology model based on the crystal structures of MAT from different organisms, the alpha subunit of human MAT isoform 2 (hMAT2A) (PDB ID 2p02) and C. hominis MAT (PDB ID 4odj) ... |
| 7 | 3ecd | 3h7f | http://www.biomedcentral.com/1472-6750/14/93 | A novel serine hydroxymethyltransferase from Arthrobacter nicotianae: characterization and improving catalytic efficiency by rational design | 2014 | W Jiang, L Chen, S Yuan, B Li, Z Liu - BMC biotechnology, 2014 - biomedcentral.com | ... directed mutagenesis was indicated on the three-dimensional structure of AnSHMT, which wasconstructed from the known x-ray structure of Burkholderia Pseudomallei MycobacteriumTuberculosis T.Th.Hb8 (PDB entry 3H7F, 2DKJ and 3ECD) using Swiss ... |
| 8 | 3pm6 | - | http://pubs.acs.org/doi/abs/10.1021/bi501141t | Structural and Functional Characterization of Methicillin-Resistant Staphylococcus aureus's Class IIb Fructose 1, 6-Bisphosphate Aldolase | 2014 | GC Capodagli, SA Lee, KJ Boehm, KM Brady… - Biochemistry, 2014 - ACS Publications | ... Using SaFBA along with the recent deposition of class IIb FBAs from B. anthracis (PDB Code: 3Q94) and Coccoidioides immitis (PDB Code: 3PM6) into the PDB, an updated categorization of class IIb subtypes can be envisioned (Figure 6) ... |
| 9 | 4dlp | 4ncx | https://www.biorxiv.org/content/early/2018/10/11/440891.abstract | Aminoacyl tRNA Synthetases as Malarial Drug Targets: A Comparative Bioinformatics Study | 2018 | DW Nyamai, OT Bishop- bioRxiv, 2018 - biorxiv.org | are highly conserved in their catalytic domains, in general aaRSs show sequence, structural 62 catalytic site architecture and the manner of charging tRNA [18,20] the connective peptide I (CPI) in all enzymes in this class whose structure is characteristic of 113 |
| 10 | 3sdo | - | https://www.biorxiv.org/content/10.1101/2020.08.24.261826v1.abstract | On the diversity of F420-dependent oxidoreductases: a sequence-and structure-based classification | 2020 | ML Mascotti, MJ Ayub, M Fraaije- bioRxiv, 2020 - biorxiv.org | monooxygenase (NTA_MO, PDB : 3sdo ), as well as the well-known bacterial FMN- dependent luciferases (eg.: LuxB, PDB : 1luc) [28]. The topology suggests that cofactor vary considerably in structure and function, and comprise the F420H2-NADP+ oxidoreductases |