We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5HSX | 2016 | 0 |
| 8FUY | 2023 | 0 |
| 5HX9 | 2016 | 0 |
| 8G0R | 2023 | 0 |
| 7TMF | 2022 | 0 |
| 8G0U | 2023 | 0 |
| 5I92 | 2016 | 0 |
| 8G0V | 2023 | 0 |
| 8SA7 | 2023 | 0 |
| 8SA8 | 2023 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3ek1 | 4o5h | https://trace.utk.edu/islandora/object/utk.ir.td%3A13699/datastream/PDF/download... | Cell-Free Enabled Bioproduction and Biological Discovery | 2020 | DC Garcia - 2020 - trace.utk.edu | The combined use of bioinformatic software and structural data has crystal structures or computationally modeled structures to further cull the listed Enzymatic steps are written above the colored arrows and names of ligands and products underneath their molecular structure |
| 2 | 3gwc | 4f4a, 4fkx, 4emd | http://14.139.186.108/jspui/handle/123456789/31568 | PROTEIN-LIGAND INTERACTIONS AND STRUCTURE-BASED INHIBITOR DISCOVERY | 2018 | S Usha, S Selvaraj - 2018 - 14.139.186.108 | i) Target structure A target structure experimentally determined through X-ray crystallography or NMR spectroscopy techniques and deposited in the PDB is the ideal starting point for docking. Structural genomics has accelerated the rate at which target structures are |
| 3 | 4g5d | 4h7p, 4h51 | https://papers.ssrn.com/sol3/papers.cfm?abstract_id=4758152 | Targeting Leishmania with Nitrovinyl Derivatives: Synthesis, in Vitro Assessment, and Computational Exploration | 2024 | A Asadipour, F Ghelich Khani, F Sharifi- Vitro Assessment, and - papers.ssrn.com | nitrovinyl pharmacophore within the structures of -nitrostyrenes PDB files were employed throughout all procedures, each Ligand interactions of compound 17 with 4G5D (left) and 19 ... several notable high-probability outcomes are evident, with the scores associated with the 1XTP (a SAM-dependent methyltransferase) and 4G5D (Prostaglandin F synthase) receptors exhibiting the highest degree of prominence |
| 4 | 5u9p | 3ftp | https://pdfs.semanticscholar.org/eba1/31d1aecdd33eafa513c4bec6c3ec37d01b5b.pdf | Electrical Supporting information | 2018 | F Sha, Y Zheng, J Chen, K Chen, F Cao, M Yan - pdfs.semanticscholar.org | Entry Enzyme GenBank accession no. Amino acid identities with PspPDH [%] Template PDB code TM- scorea Gbind [kcal mol-1] 23 PhpPDH WP_045028254 41.53 4z9y 0.90 -5.71 1.96 24 DfPDH WP_050774712 31.98 5u9p 0.90 -11.90 2.01 |
| 5 | 3uw1 | 3u7j, 4em8 | https://www.arca.fiocruz.br/handle/icict/24191 | Identificao in silico de potenciais inibidores da ribose 5-fosfato isomerase de Trypanosoma cruzi | 2017 | VVS Castilho - 2017 - arca.fiocruz.br | In this study, novel potential inhibitors were proposed for the Rpi of T. cruzi (TcRpi) based on a computer-aided approach, including structure -based and ligand-based pharmacophore modeling ativo da estrutura cristalogrfica TcRpiB ( PDB 3K7S) .... 70 |
| 6 | 3t7c | 3pgx | http://www.ir.juit.ac.in:8080/jspui/handle/123456789/23859 | Identification of Genes Involved in IN VIVO Virulence of Mycobacterium Fortuitum as Potential Drug Target | 2020 | R Srivastava - 2020 - ir.juit.ac.in | acidic, hypoxic and detergent stress conditions. Structural and functional characterization of most potent ORF Mfsdr was done using in silico approaches. MfSdr was predicted to be acid synthesis. Secondary structure of MfSdr generated using Robetta server showed presence |
| 7 | 3ej0 | 3gqt | http://theop11.chem.elte.hu/main_index_files/2011_VassM%C3%A1rton_Vegy%C3%A9szMS... | In silico modeling of cooperative ligand binding | 2011 | M Vass - theop11.chem.elte.hu | ... binding conformations of ligands. A set of 115 X-ray crystal structures was collected from the RCSB Protein Data Bank (PDB) containing at least two non-cofactor type ligands in close proximity to each other believed to be a result of cooperative binding. The commercial ... |
| 8 | 3emj | 3ld3, 3lo0, 3gvf, 3fq3 | http://www.doria.fi/handle/10024/69593 | The Structural Basis for inorganic Pyrophosphatase Catalysis and Regulation | 2011 | H Tuominen - 2011 - doria.fi | ... In addition, the PPase structures from five other species (Anaplasma phagocytophilum, Ehrlichia chaffeensis, Burkholderia pseudomallei, Brucella melitensis and Rickettsia prowazekii) (PDB ID: 3LD3, 3LO0, 3GVF, 3FQ3 and 3EMJ, respectively) obtained in the latest structural ... |
| 9 | 3qh8 | 3py6, 3py5 | http://www.biochemj.org/content/475/1/261 | An unusual diphosphatase from the PhnP family cleaves reactive FAD photoproducts | 2018 | GAW Beaudoin, Q Li, SD Bruner, AD Hanson- Biochemical Journal, 2018 - biochemj.org | Skip to main content. Main menu. Home; About the Journal: Scope; Editorial Board; Impact & Metrics; Benefits of Publishing; Advertising/Sponsorship; About the Biochemical Society. Current Issue; For Authors: Submit Your Paper; Submission |
| 10 | 3f0g | 3ieq | http://discovery.dundee.ac.uk/portal/files/3384819/O'Rourke_phd_2013.pdf | Structural studies to inform antimicrobial drug discovery and the basis of immunity against T6 effectors | 2013 | P O'Rourke - 2013 - discovery.dundee.ac.uk | ... Search models for molecular replacement used coordinates from orthologues in E. coli (PDB code: 1GX1; ~33% identity, Kemp et al., 2002) and B.pseudomallei (PDB code: 3F0G;63%,Begley et al., 2011) for PfIspF and BcIspF respectively, edited to remove all non-protein atoms. ... |