We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5VN6 | 2017 | 0 |
| 8SLF | 2023 | 0 |
| 8SLD | 2023 | 0 |
| 9Z8K | 2025 | 0 |
| 8SKF | 2023 | 0 |
| 9Z9C | 2025 | 0 |
| 5VIX | 2017 | 0 |
| 5VC2 | 2017 | 0 |
| 5VA8 | 2017 | 0 |
| 5V77 | 2017 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3tcq | - | https://www.biorxiv.org/content/10.1101/2020.05.27.108969v1.abstract | Common substructures and sequence characteristics of sandwich-like proteins from 42 different folds | 2020 | A Kister- BioRxiv, 2020 - biorxiv.org | structural classification in PDBSum database30 does not support sandwich-like architecture was examined. For secondary structure analysis, the information about localization of strands in sequences was taken from PDB .31 For supersecondary structure (SSS) of the domains |
| 2 | 3tv2 | - | http://onlinelibrary.wiley.com/doi/10.1002/cmdc.201390041/full | Inside Cover: CONFECT: Conformations from an Expert Collection of Torsion Patterns (ChemMedChem 10/2013) | 2013 | C Sch?rfer, T Schulz-Gasch, J Hert? - ?, 2013 - Wiley Online Library | ... frequency histograms (top left). One of the bioactive conformations of AMP is shown in the binding site of the protein from PDB complex 3TV2 (bottom right). For more details, see the Full Paper by Matthias Rarey et al. on p. 1690 ff. ... |
| 3 | 7m55 | 7sof, 7n8i | https://search.proquest.com/openview/6076f420cc7b3f957d5b61b03be88b81/1?pq-origs... | Structural Insights Into Host-Pathogen Interactions of Coronaviruses and Alphaviruses | 2026 | LJ Adams - 2026 - search.proquest.com | Secondary structural elements idenfified via DSSP are labeled.( E ) Pre-fusion structure of S2 ( PDB : 6XR8). One monomer of S2 is displayed as a cartoon ribbon and colored according |
| 4 | 4e98 | 4iyq | https://riunet.upv.es/handle/10251/117999 | Bases estructurales de la sealizacin y regulacin por nitrgeno y procesos asociados. | 2019 | L Tremio Agull - 2020 - riunet.upv.es | PDB : banco de datos de protenas (Protein Data Bank: https://www.rcsb.org/ pdb /home/home. do) PEG 49 Captulo 1: Studies on cyanobacterial protein PipY shed light on structure , potential functions Functional and structural studies in bacteria ----- 117 |
| 5 | 7jx3 | - | https://www.nature.com/articles/s42003-023-04782-6 | Structural basis of spike RBM-specific human antibodies counteracting broad SARS-CoV-2 variants | 2023 | K Shitaoka, A Higashiura, Y Kawano- Communications, 2023 - nature.com | package with the combination of RBD structure ( PDB ID:7EAM) and Fab structures ( PDB ID:7CHB and 7CHP) as search models. The structure refinement was performed using the ... Class 3b/S309 (PDB ID:7JX3), Class 4a/CR3022 (PDB ID:6ZLR), Class 4b/S2X259 (PDB ID:7M7W), and Class 5/S2H97 (PDB ID:7M7W) open data were used in Fig. 3a. |
| 6 | 3sbx | - | http://amsdottorato.unibo.it/8793/ | Atypical LONELY GUY protein in Bordetella pertussis synthetizes a cytokinin-like compound negatively related to oxidative stress | 2019 | F Moramarco - 2019 - amsdottorato.unibo.it | BP1253 and LOGs, while Cluster omega to realize amino acid sequence alignment with specific type-I and type-II LOGs. The structural analysis were performed through PDB Viewer, either to develop the modeling of BP1253 that to determinate the coordinates of ... Characteristic of this M. marinum protein with PDB ID 3SBX is that it was crystallized in complex with AMP |
| 7 | 4q14 | - | https://researchrepository.rmit.edu.au/view/delivery/61RMIT_INST/122552998300013... | HISTIDINE PROTONATION AS A POSSIBLE MECHANISM FOR HUMAN TRANSTHYRETIN AMYLOIDOSIS: MODELLED AGAINST WALLABY | 2020 | DG D'SOUZA - 2020 - researchrepository.rmit.edu.au | 0.97 indicated a highly conserved overall structure between the solved structure of wallaby TTR and a known crystal structure of human TTR ( PDB : 3U2I). The structural homology was strong with an almost perfect overlap of their peptide backbones, secondary, tertiary and ... Table 3.3 Predicted model of human TTR compared to other structurally similar proteins 7 4Q14 Brucella 0.806 1.62 0.283 0.890 |
| 8 | 3r1i | - | http://journals.iucr.org/f/issues/2014/10/00/no5061/no5061bdy.html | Structure of a short-chain dehydrogenase/reductase (SDR) within a genomic island from a clinical strain of Acinetobacter baumannii | 2014 | BS Shah, SG Tetu, SJ Harrop, IT Paulsen… - Structural Biology and …, 2014 - journals.iucr.org | ... [Figure 2], Figure 2 Structure of SDR ... 4g81 ; pale red), 3-oxoacyl-(ACP) reductase (Synechococcuselongatus FabG2; PDB entry 4dmm ; pale green), 3-oxoacyl-(ACP) reductase (S. aureus FabG3;PDB entry 3osu ; pale blue), M. marinum SDR (PDB entry 3r1i ; pale yellow ... |
| 9 | 2mrc | 7ry7 | https://onlinelibrary.wiley.com/doi/abs/10.1155/bri/2724332 | Gene Expression, Docking and Machine Learning in Malaria Drug Discovery: A Systematic Review | 2026 | RS Dangana, IE Ebhohimen, SA Malgwi- Biochemistry, 2026 - Wiley Online Library | The last studies have used deep learning docking methods, that is, the difusion model (Targetdif), to generate and screen novel compounds using structural features of essential... Immune/inflammatory response High mobility group Box 1 (PfHMGB1 HsHMGB1) 2MRC, 1HME |
| 10 | 3o0h | - | https://core.ac.uk/download/pdf/85124980.pdf | Structural analysis of protein-small molecule interactions by a crystallographic and spectroscopic approach | 2017 | R Fagiewicz - 2017 - core.ac.uk | Uniprot and/or PDB database. In green is highlighted best identity of available biocrystallography reached the mature age and transformed into structural biology. doing extensive work in the structure determination by employing more and more advanced technologies |