We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8SU6 | 2023 | 0 |
| 6B8V | 2017 | 0 |
| 6B9U | 2017 | 0 |
| 6BKV | 2017 | 0 |
| 8SWD | 2023 | 0 |
| 8T1A | 2023 | 0 |
| 8T5J | 2023 | 0 |
| 8T5N | 2023 | 0 |
| 6BZB | 2018 | 0 |
| 8T5T | 2023 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3gbz | - | https://pubs.rsc.org/--/content/articlehtml/2020/me/c9me00097f | How does evolution design functional free energy landscapes of proteins? A case study on the emergence of regulation in the Cyclin Dependent Kinase family | 2020 | Z Shamsi, D Shukla- Molecular Systems Design & Engineering, 2020 - pubs.rsc.org | PDB ID: 5OSM, 6Q3F, 6Q4A, 6Q4B, 6Q4C, 6Q4D, 6Q4K), G/CDK ( PDB ID: 3GBZ ), and pfpk5 on the GA341 score and have comparable DOPE scores with the CDK2 native structure as shown Template's PDB ID, DOPE score for CMGI, DOPE score for native CDK2, GA341 score |
| 2 | 3rd5 | - | http://brain.oxfordjournals.org/content/early/2013/12/24/brain.awt338.short | The tumour suppressor gene WWOX is mutated in autosomal recessive cerebellar ataxia with epilepsy and mental retardation | 2013 | M Mallaret, M Synofzik, J Lee, CA Sagum, M Mahajnah? - Brain, 2013 - Oxford Univ Press | ... The mutated glycine 372 is located in the C-terminal part of the dehydrogenase/reductase domain of WWOX. The closest homologue of this domain with known 3D structure is 3RD5, a bacterial small dehydrogenase/reductase (pdb code 3RD5). ... |
| 3 | 6bfu | - | https://link.springer.com/article/10.1186/s12859-019-3097-6 | Glycosylator: a Python framework for the rapid modeling of glycans | 2019 | T Lemmin, C Soto- BMC bioinformatics, 2019 - Springer | 1 ha0. 5fyl (gp120). 6bfu . Number of sequons. 6 A second N-Acetyl-D-Glucosamine will then be linked through a 1-4 glycosidic bond. Finally, an Alpha-D-Mannosewill be built ab initio and saved to a PDB file The structure of a mannose 9 will be imported as a Molecule instance |
| 4 | 3o0h | - | https://www.degruyter.com/view/j/zkri.ahead-of-print/zkri-2018-2064/zkri-2018-20... | Sulfur (lone-pair) interactions with FAD in flavoenzymes | 2018 | RFN Silva, ACS Sacco, I Caracelli- Zeitschrift fr, 2018 - degruyter.com | The interactions of π-systems with lone-pairs of electrons are known and have been described in biological systems, involving lone-pairs derived from metals, metalloids, sulphur, oxygen and nitrogen. This study describes a bibliographic survey of the disulphide-bound sulphur(lone-pair) interactions with -systems residing in the flavin ad Also, the S(lp)…π(FAD) interaction in the 1K4Q [64] and 3O0H [65] proteins show the orientation of sulphur-lp to the Ct(U) centroid, F |
| 5 | 3qhd | 3mbm, 3k14, 3jvh, 3f0d | http://search.proquest.com/openview/61c4474dc9c0d8c235198f27f91a8eb4/1?pq-origsi... | Characterization of potential anti-infective agents of Burkholderia pseudomallei targeting IspF | 2016 | JM Blain - 2016 - search.proquest.com | 103 Page 16. xiii Figure 3-3 Docking HGN-0006/HGN-0007 display structural differences in binding . 106 Page 22. xix PDB protein data bank PEEK polyether ether ketone rpm rotations per minute SAR structure activity relationship SDS sodium dodecylsulfate SE size exclusion |
| 6 | 3oa3 | 3ndo, 3ngj | https://patents.google.com/patent/US20180340193A1/en | Methods And Microorganisms For The Production Of 1, 3-Butanediol | 2018 | R Mahadevan, A Yakunin, P Gawand- US Patent App. 15, 2018 - Google Patents | 2.4.). In some embodiments, DERA enzymes can be described as class I aldolases that form covalent Schiff base intermediates. In all studied structures , DERA adopts the classical eight-bladed TIM barrel fold. The oligomerisation |
| 7 | 3k2h | - | http://bioinformatics.oxfordjournals.org/content/early/2015/04/15/bioinformatics... | Global optimization-based inference of chemogenomic features from drug–target interactions | 2015 | S Zu, T Chen, S Li - Bioinformatics, 2015 - Oxford Univ Press | ... In recent years, several non-structure-based methods, which are not limited by the structureinformation have been developed, along the ... Examples of the substructure-domain interactionsvalidated from the PDB database: (A) PDB entry 1u70, (B) PDB entry 3k2h, (C) PDB ... |
| 8 | 3mc4 | - | http://www.sciencedirect.com/science/article/pii/S1570963914001836 | Crystal structure of serine acetyl transferase from< i> Brucella abortus</i> and its complex with coenzyme A | 2014 | S Kumar, N Kumar, N Alam, S Gourinath - Biochimica et Biophysica Acta ( , 2014 - Elsevier | ... max SAT [10] have been previously published. The coordinates of a crystal structure of SAT from Brucella melitensis has also been deposited at the Protein Data Bank (PDB code: 3MC4). SATs from E. coli, B. melitensis, H. influenzae ... |
| 9 | 4dxl | - | https://patents.google.com/patent/US20180271098A1/en | Oxadiazole and phenol derivatives as antibacterial and/or herbicidal agents | 2018 | TJ Hagen, M Thompson, JR Troxell- US Patent App. 15, 2018 - Google Patents | To date, there are 17 crystal structures of six different species of IspE deposited in the PDB with 17 different ligands FIG. 11 . X-Ray Crystal Structure of Mycobacterium abscessus IspE with ATP (red) and CMP (blue) Bound to Active Site; PDBID 4DXL . FIG. 12 |
| 10 | 2khp | - | http://rave.ohiolink.edu/etdc/view?acc_num=akron1396871078 | Nuclear Magnetic Resonance Spectroscopy in the Study of Protein Complexes | 2014 | SM Bilinovich - 2014 - rave.ohiolink.edu | ... Molecular simulations and docking studies were performed using the pdb coordinates of the NMR determined structure of Brucella melitensis GRX (pdb 2KHP) (Leeper et. al 2011). Autodocking was performed using a copper(I) ion ... |