We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3k9w | - | http://ir.inflibnet.ac.in:8080/jspui/bitstream/10603/184372/13/13_refernces.pdf | Structural and functional characterization of type three secretion associated proteins from Yersinia enterocolitica and vitamin biosynthesis pathway proteins from | 2016 | R Chatterjee - 2016 - ir.inflibnet.ac.in | Crystal structures of homologues of SycB from PDB (SycD[2VGX], IpgC[3- GYZ], PcrH[2XCC]) showed that Consensus server of secondary structure prediction showed that SycB has 75.7% of helix and rest of Expression, Purification, Structural and Functional Analysis of SycB |
| 2 | 6d9y | - | https://academic.oup.com/bbb/advance-article-abstract/doi/10.1093/bbb/zbaf015/79... | Crystal structure of l-2-keto-3-deoxyrhamnonate 4-dehydrogenase involved in the non-phosphorylating pathway of l-rhamnose metabolism by bacteria | 2025 | M Akagashi, S Watanabe- Bioscience, Biotechnology, and, 2025 - academic.oup.com | The closest related structure in the Protein Data Bank ( PDB ) is the hypothetical protein of Burkholderia phymatum ( PDB ID 6D9Y ); rmsd of 0.5 A over 237 C atoms with a sequence |
| 3 | 3tjr | - | https://www.biorxiv.org/content/10.1101/2020.07.15.204123v2.abstract | On the Emergence of P-Loop NTPase and Rossmann Enzymes from a Beta-Alpha-Beta Ancestral Fragment | 2020 | LM Longo, J Jablonska, P Vyas, R Kolodny, N Ben-Tal- bioRxiv, 2020 - biorxiv.org | between Rossmanns and P-loops, ideally with respect to not only structure but also sequence 2003.1.1.417; PDB : 1k2w) and short chain dehydrogenase (F-Group 2003.1.1.332; PDB : 3tjr ) showing the highest overlap (Figure 4) |
| 4 | 2khp | - | https://etd.ohiolink.edu/!etd.send_file?accession=akron1460988438&disposition=at... | Identifying selective ligands for glutaredoxin proteins with fragment based drug design approach and optimization of the bacterial selective hits | 2016 | RB Khattri - 2016 - etd.ohiolink.edu | ...These were compared to structures deposited in the Protein Data Bank (RCSB PDB). The PBD name for the BrmGRX is 2KHP (Leeper et. al, 2011) and hGRX1 is 1JHB (Sun et. al, 1998).. ... |
| 5 | 2kwl | 2l4b | http://etheses.whiterose.ac.uk/id/eprint/7720 | Cloning, expression and characterisation of the starter module from indanomycin biosynthesis | 2014 | SR Derrington - 2014 - etheses.whiterose.ac.uk | Both structure calculations produced comparable structures for IdmK. The structure 137 4.5 Structure determination using NMR spectroscopy ..... 139 4.5.1 Initial analysis of the suitability of IdmK for structural studies by NMR ... Further validation was carried by comparison with known canonical acyl carrier protein folds (PDB codes: 1HY8, 1T8K, 1VKU, 2AVA, 2CGQ, 2GDW, 2KOO, 2KWL and 2L0Q) (X |
| 6 | 3sbx | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5379747/ | Structural basis for a novel type of cytokinin-activating protein | 2017 | H Seo, KJ Kim - Scientific Reports, 2017 - ncbi.nlm.nih.gov | ... M. marinum (MmLOG) in complex with AMP (Protein Data Bank code 3SBX) revealed the ... Therefined model of CgLOGII was deposited in the Protein Data Bank (PDB code 5WQ3 ... Thethree-dimensional structure of Lonely Guy from Claviceps purpurea provides insights into the ... |
| 7 | 3gaf | - | http://www.jpbms.info/index.php?option=com_docman&task=doc_download&gid=64&Itemi... | Computational analysis of the SAG 13 gene encoding an alcohol dehydrogenase | 2010 | M Adhikary, S Ganguli, HJ Chakraborty, P Basu et al. - Journal of Pharmaceutical and Biomedical Sciences - jpbms.info | ... protein structure to be used as template using BLAST (Basic Local Alignment Search Tool) (1) against PDB (Protein Data Bank). The sequence with maximum identity and less e value was chosen and used as the reference structure for homology modeling. [3GAF, 1AE1 and ... |
| 8 | 3k2c | - | https://www.biorxiv.org/content/biorxiv/early/2019/09/05/758029/DC1/embed/media-... | Supplementary material to GISA: Using Gauss Integrals to identify rare conformations in protein structures | 2019 | C Grnbk, T Hamelryck, P Rgen - 2019 - biorxiv.org | The rar2 scoring method scans for structures having a distribution of words significantly different from that found in the old, here set to 7 ngstrm; the E chain of the 2er7 structure is disqualified for this reason, but 7> means that in the PDB -file the chain id was left blank 14 |
| 9 | 3h81 | - | https://www.frontiersin.org/articles/10.3389/fmicb.2017.02034/abstract | Molecular insight into the acryloyl-CoA hydration by AcuH for acrylate detoxification in dimethylsulfoniopropionate-catabolizing bacteria | 2017 | HY Cao, P Wang, F Xu, PY Li, BB Xie, QL Qin- Frontiers in, 2017 - frontiersin.org | Structure Determination and Refinement. The structure of RdAcuH was solved by molecular replacement using Phaser (Potterton et al., 2003). An enoyl-CoA hydratase ( PDB ID code: 3H81 ) was used as the searching model |
| 10 | 3p96 | - | http://ir.inflibnet.ac.in:8080/jspui/bitstream/10603/224095/3/jbc%202014.pdf | Identification of Novel Drug Target Pathways and Scaffolds to Combat Tuberculosis | 2018 | A Garima - 2018 - ir.inflibnet.ac.in | of Porphyromonas gingivalis into host cells by modulating host cytoskeletal architecture , innate immune of SerB1- and SerB2-modeled proteins over 3FVV and 3P96 , respectively, resulted The superimpositions of SerB1 and SerB2 models over HPSP crystal structure resulted in |