We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8G0R | 2023 | 0 |
| 8FUY | 2023 | 0 |
| 5HSX | 2016 | 0 |
| 5HL6 | 2016 | 0 |
| 5HGW | 2016 | 0 |
| 5F9Y | 2016 | 0 |
| 8FI5 | 2022 | 0 |
| 8FI4 | 2022 | 0 |
| 8FI3 | 2022 | 0 |
| 8FBM | 2023 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4fkx | - | http://link.springer.com/article/10.1007/s10822-017-0022-9 | Discovery of novel inhibitors for Leishmania nucleoside diphosphatase kinase (NDK) based on its structural and functional characterization | 2017 | AK Mishra, N Singh, P Agnihotri, S Mishra - Journal of Computer- , 2017 - Springer | ... novel LaNDK inhibitors, the crystal structure of Leishmania major NDKb in complex with ADP(PDB ID: 3NGU ... three fold virtual screening uti- lizing Surflex-dock, GeomX and Flex-X, as ourstructure lacks the ... TbNDK (4FKX) 32,672 14,027 20,443 3566 32.7 6.6 Hexamer Dimer ... |
| 2 | 3o0m | - | https://edoc.ub.uni-muenchen.de/21623/ | Evolutionary coupling methods in de novo protein structure prediction | 2016 | S Seemayer - 2016 - edoc.ub.uni-muenchen.de | On homomeric proteins, intermolecular couplings (red) have to be disentangled from intramolecular couplings (yellow) for de novo structure prediction to succeed (representative contacts mapped on PDB code 3O0M) |
| 3 | 2lwk | - | https://www.frontiersin.org/articles/10.3389/fchem.2020.00107/full?utm_source=S-... | Exploring the RNA-Recognition Mechanism Using Supervised Molecular Dynamics (SuMD) Simulations: Toward a Rational Design for Ribonucleic-Targeting | 2020 | M Bissaro, M Sturlese, S Moro- Frontiers in Chemistry, 2020 - frontiersin.org | (B) Superimposition between the experimental NMR complex ( PDB ID 2LWK , green-colored DPQ (D) RMSD of RNA phosphate atoms belonging to the backbone, computed against the PDB reference. (E) Flexibility characterizing the RNA structure during DPQ binding event |
| 4 | 3oa1 | - | https://edoc.ub.uni-muenchen.de/23348/1/Wachowius_Marco.pdf | The rabies virus phosphoprotein: novel targets and functions involved in interferon antagonism | 2016 | M Wachowius - 2016 - edoc.ub.uni-muenchen.de | After attachment to the extracellular target structure Structural data available for the dimerization domain ( PDB ID 3L32) and C- terminal domain ( PDB ID 3OA1 ) were visualized with Cn3D software by NCBI B) Overview over the RABV P trafficking signals |
| 5 | 5unb | - | https://pdfs.semanticscholar.org/9d45/bcaa3c016845d28a2001ff2f58c6ca8ea726.pdf | Supplementary materials to PconsC4: fast, free, easy, and accurate contact predictions. | 2018 | M Michel, D Menndez-Hurtado, A Elofsson - 2018 - pdfs.semanticscholar.org | PconsC4 is trained on a set of 2759 proteins culled from PDB using PISCES (Wang and in (Michel et al., 2017) and the 46 proteins from CASP12 with available structures , Table S6 It is pre-trained to predict secondary structure and surface accessibility for each residue (golden |
| 6 | 4h3e | 4lsm | https://chemistry-europe.onlinelibrary.wiley.com/doi/abs/10.1002/cmdc.202500408 | Sertraline as a Scaffold for Antitrypanosoma Cruzi Drug Development: Design of Novel Derivatives and Computational Target Screening | 2025 | AS Mijoba, Z Blanco, NJ ParraGimnez- , 2025 - Wiley Online Library | For this analysis, we selected a panel of 14 key therapeutic targets involved in T. cruzi's physiological functions. The studied target proteins included: ...glyceraldehyde-3-phosphate dehydrogenase (4LSM)... superoxide dismutase (4H3E), trypanothione reductase (1AOG), and phosphodiesterase C (3V94). |
| 7 | 5vwm | 6ote, 6pth, 6cfp | https://papers.ssrn.com/sol3/papers.cfm?abstract_id=4633401 | Unveiling Success Determinants for Amb-Assisted Phase Expansion of Fusion Proteins in Arp/Warp | 2023 | MC Cardona-Echavarra, C Santilln - papers.ssrn.com | In this study, the PDB was mined to obtain an up-to-date list of the FP crystallographic 103 structures of the most used protein tags: maltose binding protein (MBP), thioredoxin (TRX), |
| 8 | 3k9g | 3s6l, 3oib, 3km3, 3njb, 3o2e | https://scripts.iucr.org/cgi-bin/paper?nz5010 | Multivariate estimation of substructure amplitudes for a single-wavelength anomalous diffraction experiment | 2023 | NS Pannu, P Skubk- Acta Crystallographica Section D: Structural, 2023 - scripts.iucr.org | The model-building performance is judged by the fraction of the PDB -deposited model backbone that is `correctly built'. A residue is considered to be correctly built if its C position is at |
| 9 | 3kcq | - | http://jb.oxfordjournals.org/content/154/6/569.short | Structures and reaction mechanisms of the two related enzymes, PurN and PurU | 2013 | G Sampei, M Kanagawa, S Baba? - Journal of Biochemistry, 2013 - Jpn Biochemical Soc | ... The structure of PurN from A. phagocytophilum HZ (PDB ID: 3KCQ) is also similar to those of PurNs described above. ... 3A and B). PurNs from M. tuberculosis (10) and A. phagocytophilum HZ (PDB ID: 3KCQ) also form the same types of dimers as AaPurN and StPurN. ... |
| 10 | 3cez | - | http://ntnu.diva-portal.org/smash/record.jsf?pid=diva2:603697 | Structure-functional Characterization of Mammalian Redox Proteins: Methionine sulfoxide reductase B1 (MsrB1), Glutaredoxin domain (Grx) of TGR, and Thioredoxin (Trx) | 2013 | O Dobrovolska - 2013 - ntnu.diva-portal.org | ... situated in the second ?-sheet. The four cysteines Cys23, Cys26, Cys71, and Cys74, situated outside the protein active site, coordinate zinc ion, stabilizing the structure of MsrB1. Figure II.1.2. Structure of MsrB1 (pdb code 2kv1) [55]. II.1.1 MsrB1-Thioredoxin interaction ... |