SSGCID
Seattle Structural Genomics Center for Infectious Disease

Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Manually reviewed citations

# PDB Additional SSGCID structures cited Link Title Year Citation Highlighted abstract
1 3s6d - http://www.sciencedirect.com/science/article/pii/S1570963916301844 Structural insights from a novel invertebrate triosephosphate isomerase from Litopenaeus vannamei 2016 AA Lopez-Zavala, JS Carrasco-Miranda - et Biophysica Acta (BBA , 2016 - Elsevier ... Glycolysis is one of the most regulated metabolic pathways, however little is known about thestructural mechanisms for its regulation in non-model ... Using the DALI server [53] to look for similar structures, the root mean square deviation (RMSD) for backbone carbons between LvTIM and...P. falciparum (1WOB) 1.5 A, Coccidioides immitis (3S6D) 2.1 A
2 4ni5 - http://pubs.rsc.org/is/content/articlehtml/2016/cc/c6cc00051g Structure-guided stereoselectivity inversion of a short-chain dehydrogenase/reductase towards halogenated acetophenones 2016 A Li, L Ye, X Yang, C Yang, J Gu, H Yu - Chemical Communications, 2016 - pubs.rsc.org ... As a powerful method to decipher a possible molecular basis for enzyme properties, structuralcomparison involving the detailed structure alignment has ... using SDRs from Drosophilamelanogaster (31% identity, PDB: 1SNY A) and Brucella suis (48% identity, PDB: 4NI5 A) as ...
3 7so9 - https://dergipark.org.tr/en/pub/biotechstudies/issue/77337/1332403 Omicron variants bind to human angiotensin-converting enzyme 2 (ACE2) much stronger due to higher number of charged-charged interactions 2023 S Kalyoncu- Biotech Studies - dergipark.org.tr Three dimensional RBD domain structures of many variants used in this study were already in RCSB PBD database ( PDB IDs: 7EKF for Alpha, 7EKG for Beta, 7EKC for Delta, 7SO9 for
4 3gmt - http://search.proquest.com/openview/538b8312b902cea141c5c8db86405d91/1?pq-origsi... Computational Approaches to Simulation and Analysis of Large Conformational Transitions in Proteins 2017 SL Seyler - 2017 - search.proquest.com The intricacies of the current state of knowledge surrounding protein conformational. transitions and the structure -function connection is perhaps more easily understood in the and four in ligand-free (apo), open-like states ( PDB IDs 4ake, 2rh5, 3umf, 3gmt [26])
5 3eg4 3mdx, 3qxi, 3lqw, 3laa, 3oc7 http://www.theses.fr/2015GRENM005/abes Nouvelles méthodes de calcul pour la prédiction des interactions protéine-protéine au niveau structural 2015 P Popov - 2015 - theses.fr ... au niveau structural Thèse soutenue publiquement le « 28 Janvier 2015 », devant le jury composéde : ... blue, respectively). Right: native structure of Target 58 (grey) and medium-quality model pro- ...18 2.2 Query protocols for the PDB that were used to compose the bound bench- ...
6 7jzl - https://www.nature.com/articles/s41598-025-12444-2 Fusion of SARS-CoV-2 neutralizing LCB1 peptide with Bacillus amyloliquefaciens RNase improves antiviral efficacy 2025 NN Kostin, TV Bobik, EV Konovalova- Scientific Reports, 2025 - nature.com structural interaction with the trimeric spike ( PDB : 7JZL ). Its in vivo efficacy has been demonstrated in multiple studies, including in transgenic mouse models 14 . Moreover, its compact
7 3mmt - https://chemrxiv.org/ndownloader/files/24733793 The Molecular Basis of Sulfosugar Selectivity in Sulfoglycolysis 2020 M Sharma, P Abayakoon, Y Jin, R Epa, JP Lingford - 2020 - chemrxiv.org Figure S15. Closed conformations of PfkB, TPK and SF kinases indicate close structural rela- tionship EcYihVADPMgSF structure reveals KRN sulfonate recognition triad in YihV A, FBPA from Bartonella henselae forms homotetramers ( 3MMT . pdb ),{, 2011 #8494} FBPA from
8 3hhe - http://www.sciencedirect.com/science/article/pii/S109332631730356X In silico identification of inhibitors of ribose 5-phosphate isomerase from Trypanosoma cruzi using ligand and structure based approaches 2017 V de VC Sinatti, LPR Baptista, M Alves-Ferreira - Journal of Molecular , 2017 - Elsevier ... Abbreviations: LB, Ligand-Based pharmacophore hypothesis; SB, Structure -Based pharmacophore hypothesis. ... bound to R5P substrate ( PDB ID: 3K7S) and bound to the 4PEH ( PDB ID: 3K8C) [12 ... as query and the 1XTZ (identity of 46%), 1LK7 (identity of 42%), 3HHE (identity ...
9 6bfu - https://www.biorxiv.org/content/10.1101/2020.02.18.955195v1.abstract Structure and immune recognition of the porcine epidemic diarrhea virus spike protein 2020 RN Kirchdoerfer, M Bhandari, O Martini, LM Sewall- bioRxiv, 2020 - biorxiv.org from HuCoV-NL63 (5SZS. pdb (Walls et al., 2016b)), Porcine deltacoronavirus ( 6BFU . pdb , (Xiong et pdb , (Kirchdoerfer et al., 2018)) and Infectious bronchitis virus (6CV0. pdb , (Shang et the PEDV spike differs in several regards to the previously determined NL63 spike structure
10 3mx6 - http://search.proquest.com/openview/61c4474dc9c0d8c2eab66e35f99716fb/1?pq-origsi... Methionine aminopeptidase as a target for the discovery of novel antibacterial agents 2016 C Chen - 2016 - search.proquest.com ... 14. Figure 2-1. Crystal structure of RpMetAP I (PDB ID: 3MX6, Edwards T. et. al., 2010). Metalions shown in the active site as spheres are two Mn (II) ions. 15. Materials and Methods.Screening of suitable induction conditions for expression of RpMetAp I. ...