We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5TE9 | 2016 | 0 |
| 8SAE | 2023 | 0 |
| 5T5Q | 2016 | 0 |
| 5T3Y | 2016 | 0 |
| 5KWV | 2016 | 0 |
| 5KOB | 2016 | 0 |
| 5KF0 | 2016 | 0 |
| 5KEU | 2016 | 0 |
| 5K9Z | 2016 | 0 |
| 8SAD | 2023 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5k85 | 5u29 | https://aaltodoc.aalto.fi/items/ef5fbad3-e949-4f46-8925-8ec058ca3b0b | Investigating the substrate promiscuity of acetyl-CoA synthetase from A. ethanivorans through a structural approach | 2025 | M Nikkanen - 2025 - aaltodoc.aalto.fi | Analogous and similarly spatially aligned residues residues seem to have the same function in Acs structures with PDB accession numbers 5u29 and 5k85 (figure 3) [27]. |
| 2 | 3uam | - | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4144037/ | Evolution of substrate specificity in bacterial AA10 lytic polysaccharide monooxygenases | 2014 | AJ Book, RM Yennamalli, TE Takasuka - Biotechnology for , 2014 - ncbi.nlm.nih.gov | ... These are from Hypocrea jecorina (Trichoderma reesei, Protein Data Bank (pdb) id: 2VTC) [24], Thielavia terrestris (pdb id: 3EII) [7 ... pdb id: 2BEM) [25], Vibrio cholerae O1 biovar EI Tor (pdb id: 2XWX) [26], Burkholderia pseudomallei (pdb id: 3UAM), and Enterococcus faecalis ... |
| 3 | 3e7d | - | http://www.freepatentsonline.com/y2016/0122392.html | POLYPEPTIDES FOR USE IN SELF-ASSEMBLING PROTEIN NANOSTRUCTURES | 2016 | D Baker, JB Bale, NP King - US Patent , 2016 - freepatentsonline.com | ... panel B) comprise 12 pentamers (dark grey) and 30 dimers (light grey), and the I32-28 designmodel and crystal structure (panel C ... Starting proteins were those derived from pentameric, trimeric,and dimeric crystal structures from the Protein Data Bank (PDB), along with a ... |
| 4 | 3ol3 | - | https://www.csbj.org/cms/10.1016/j.csbj.2020.11.051/attachment/ff440127-372b-492... | Supporting Information 2D Zernike polynomial expansion: finding the protein-protein binding regions | 2021 | E Milanettia, M Miottoa, L Di Rienzob, M Montic - csbj.org | comparison of protein regions that belong to different proteins, because they 35 remove the preliminary requirement of structural alignment. Moreover, the orthogonality of the |
| 5 | 7jzn | - | https://www.cell.com/heliyon/fulltext/S2405-8440(25)01465-3?uuid=uuid%3Acd981904... | Novel method for prioritizing protein binding sites using pocket analysis and MD simulations | 2025 | AD Biswas, E Sabato, S Vittorio, P Aletayeb, A Pedretti- Heliyon, 2025 - cell.com | We picked a list of 8 resolved SARS-CoV-2 spike structures from the PDB by & 3 of 7JZN . (B) The spike protein conformational states are superimposed for each pair, with one structure |
| 6 | 4q1t | - | https://www.pnas.org/doi/abs/10.1073/pnas.2413673121 | Challenging a decades-old paradigm: ProB and ProA do not channel the unstable intermediate in proline synthesis after all... | 2024 | MS Newton, AL Azadeh, AB Morgenthaler- Proceedings of the, 2024 - pnas.org | We show that changes in the structures of the kinase or jejuni ( PDB 2AKO). Conserved or conservatively substituted glutamate and sulfate in PDB 2J5V and ADP in PDB 2AKO. These ...Fig. 4. Replacement of E. coli ProB with ProBs from B. thailandensis and C. jejuni does not impair growth of E. coli on glucose. (A) Surfaces of ProB protomers from E. coli (PDB 2J5V), B. thailandensis (PDB 4Q1T), and C. jejuni (PDB 2AKO) |
| 7 | 3qh4 | - | https://www.researchsquare.com/article/rs-187084/latest.pdf | Protein Engineering for Enhanced Enantioselectivity of Carboxylesterase Est924 Toward Ethyl 2-Arylpropionates | 2021 | X Liu, M Zhao, X Fan, Y Fu - 2021 - researchsquare.com | Enhancement of the enantioselectivity of carboxylesterase A by structure -based mutagenesis. J Biotechnol Page 13. Page 13/14 PDB entry A1 A2 B1 B2 Est924 I203 A203 G208 I212 3H17 M193 V194 G198 M202 3QH4 A209 F210 A214 M218 3WJ1 F197 L198 H202 F206 |
| 8 | 4ohc | - | http://bq.facmed.unam.mx/tab/wp-content/uploads/2020/06/9-Gonzalez-Segura.pdf | Orotato fosforribosiltransferasa. Pasado, presente y futuro en el estudio estructural de las protenas. | 2020 | L Gonzlez-Segura, EI Carrizosa-Carbajal - bq.facmed.unam.mx | Past, present and future in the structural study of proteins Key words: Phosphoribosyltransferase; three- dimensional structure ; conformational change; inhibition; pyrimidines synthesis str (PDBs 3M3H y 4RV4), de Burkholderia cenocepacia ( PDB 4OHC ), de Corynebacterium |
| 9 | 3o0m | 3oj7, 3r6f, 3lb5 | https://udspace.udel.edu/items/40e2c554-f9dc-43a9-bb93-b6dd5914e73c | Potential Binding Partners of cADPR and cADPR isomers in the Thoeris Phage Defense System | 2023 | N Bomasamudram - 2023 - udspace.udel.edu | structures , and they differ based on their Cterminus. The structures of categorized Hint structures hydrocarbonoclasticus (3OHE), and Mycolicibacterium smegmatis ( 3O0M ). Type III Hint |
| 10 | 3fdz | - | http://oai.dtic.mil/oai/oai?verb=getRecord&metadataPrefix=html&identifier=ADA594... | Metabolic Signaling and Therapy of Lung Cancer | 2013 | J Chen - 2013 - DTIC Document | ... PGAM1. (A) Cartoon representation of 2,3- BPG location from structure 3FDZ superposed on PGAM1 (PDB ID: 1YFK). H11 and Y92 are directly proximal to and Y26 is also close to cofactor (2,3-BPG)/substrate (3-PG) binding site. ... |