We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4POB | 2014 | 0 |
| 8DF5 | 2022 | 0 |
| 8D57 | 2022 | 0 |
| 8D2Z | 2023 | 0 |
| 8D1X | 2022 | 0 |
| 8CXA | 2022 | 0 |
| 4O8K | 2014 | 0 |
| 8CU9 | 2022 | 0 |
| 8CU5 | 2022 | 0 |
| 8CTR | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3v2i | 4dz4, 4f3y | http://scjournal.ius.edu.ba/index.php/scjournal/article/view/152 | A Computational Biology Approach in Function Annotation to Enzymes | 2018 | M Ljubijankic- Southeast Europe Journal of Soft Computing, 2018 - scjournal.ius.edu.ba | 3.5.3.1 2Q47 3.1.1.3 3.1.3.48 3SF8 3.1.6. 3.4.-.- 3V2I 3.4.19.12 3.1.1.29 is observed in the example of the survival protein E (SurE) from Thermotogamaritima ( PDB ID 1ilv). Zhang and colleagues (2001) determined the crystal structure of this protein and in their work, described it |
| 2 | 3ijp | - | http://ir.inflibnet.ac.in:8080/jspui/handle/10603/82176 | Cloning overexpression purification and characterization of DAPB gene encoding dihydrodipicolinate reductase of pseudomonas aeruginosa PAO1 | 2016 | V Anand - 2016 - ir.inflibnet.ac.in | ... preliminary crystallization reports have been published for Staphylococcus aureus (Dommarajuet al., 2010) and Bartonella henselae (PDB code 3IJP) as well. ... biosynthesis enzyme from P.aeruginosa PAOl is an essential step to finally determine its 3-D structure and can ... |
| 3 | 3ezl | - | http://dx.plos.org/10.1371/journal.pone.0119771 | Structure, Dynamics, and Interaction of Mycobacterium tuberculosis (Mtb) DprE1 and DprE2 Examined by Molecular Modeling, Simulation, and Electrostatic … | 2015 | I Bhutani, S Loharch, P Gupta, R Madathil, R Parkesh - PloS one, 2015 - dx.plos.org | ... and Lys-418 based on the active site residues of the templates (PDB ID: 4F4Q ... Another interestingobservation was high structural similarity of generated three-dimensional structure of DprE2 withSDR family members such as acetoacetyl-coA reductase (PDBID: 3EZL, rmsd: 3.43 ... |
| 4 | 4maq | - | http://www.biochemsoctrans.org/content/early/2018/02/26/BST20170518.abstract | The fumarylacetoacetate hydrolase (FAH) superfamily of enzymes: multifunctional enzymes from microbes to mitochondria | 2018 | AKH Weiss, JR Loeffler, KR Liedl- Biochemical Society, 2018 - biochemsoctrans.org | Skip to main content. Main menu. Home; About the Journal: Scope; Editorial Board; Benefits of Publishing; Impact & Metrics; Advertising/Sponsorship; About the Biochemical Society. Current Issue; For Authors: Submit Your Paper; Submission |
| 5 | 3oj6 | 6cuq, 4o3v | https://www.biorxiv.org/content/10.1101/673897v1.abstract | Combining statistical and neural network approaches to derive energy functions for completely flexible protein backbone design | 2019 | B Huang, Y Xu, H Liu- bioRxiv, 2019 - biorxiv.org | To design a backbone, an intended framework is specified first. This framework defines at a very coarse level the intended backbone architecture , including the numbers For each native structure with the given PDB ID, results of four simulations are plotted in different |
| 6 | 3cez | - | http://scholar.google.com/https://etd.ohiolink.edu/!etd.send_file?accession=wrig... | Understanding the Molecular Dynamics of YPEL3 and FHIT Gene Expression | 2010 | KD KELLEY - 2010 - etd.ohiolink.edu | ... protein structure may also aid in understanding the molecular events involved in theinduction and maintenance of premature senescence. Identifying structural homologybetween a predicted model of YPEL3 and other known structures may ... |
| 7 | 3o0m | - | http://search.proquest.com/openview/769ccf38b4f4380a7bc1930f51547727/1?pq-origsi... | Characterization of Mycobacterial Flap Endonuclease FenA and RNA Helicase HelY | 2018 | MLL Uson - 2018 - search.proquest.com | There, she focused on the detection of circulating tumor cells and structural characterization of EphA3, a 122 Figure 4.3 Manganese ions in the FenA active site ..... 126 Figure 4.4 Active site architecture and structure -guided mutagenesis |
| 8 | 5ig2 | 3tjr | https://search.proquest.com/openview/6df7bf07391cd00cac2afea7f02e6375/1?pq-origs... | Structural Genomics of Infectious Agents | 2021 | JS Alenazi - 2021 - search.proquest.com | 4 1.3.5 Deposition of Structure in PDB ..... 4 identity to SDR from B.phymatum ( 5ig2 ) .... 45 S.3.2 Targeted approach of structure genomics can be applied to select the biologically important proteins |
| 9 | 3p0x | - | http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6636315 | Predicting Protein-Ligand Binding Sites using Support Vector Machine with Protein Properties | 2013 | G Wong, F Leung, S Ling - 2013 - ieeexplore.ieee.org | ... The structure of proteins with bound ligands are obtained from the Protein Data Bank (PDB) [8], which ... First, the real binding sites are defined from PDB and each site is represented by a grid point in the center of it. ... They are 2cwh, 1g6c, 3p0x, 1wxg, 3kco, and 1k54. ... |
| 10 | 2lwk | - | https://portal.ichb.pl/wp-content/uploads/2023/02/Doktorat_AleksandraJarmoowicz.... | Small molecules interacting with Influenza virus RNA and SARS-CoV-2 RNA as potential inhibitors of replication | 2022 | A Jarmoowicz - portal.ichb.pl | M121 structural motif of segment 5 (+)RNA secondary structure was investigated by importance of the conserved secondary structure of mentioned structural motif and suggest that it |