We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8DOQ | 2022 | 0 |
| 4W9U | 2014 | 0 |
| 4U83 | 2014 | 0 |
| 8DOP | 2022 | 0 |
| 8DOF | 2022 | 0 |
| 8DIU | 2022 | 0 |
| 8DIS | 2023 | 0 |
| 8DIM | 2022 | 0 |
| 8DGD | 2023 | 0 |
| 4PPW | 2014 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3gmt | - | http://search.proquest.com/openview/538b8312b902cea141c5c8db86405d91/1?pq-origsi... | Computational Approaches to Simulation and Analysis of Large Conformational Transitions in Proteins | 2017 | SL Seyler - 2017 - search.proquest.com | The intricacies of the current state of knowledge surrounding protein conformational. transitions and the structure -function connection is perhaps more easily understood in the and four in ligand-free (apo), open-like states ( PDB IDs 4ake, 2rh5, 3umf, 3gmt [26]) |
| 2 | 4hwg | - | https://www.biorxiv.org/content/10.1101/535138v1.abstract | Energy Landscape of the Domain Movement in Staphylococcus aureus UDP-N-acetylglucosamine 2-epimerase | 2019 | C de Azevedo, AS Nascimento- bioRxiv, 2019 - biorxiv.org | chain without ligands PDB ID Organism Ligands Oligomeric state CV Angle Chain A (deg) Rickettsia bellii ( 4HWG ). We hypothesize that the cubic symmetry observed in this crystal (UDP-GlcNac) and cofactor (UDP) are found bound in the crystal structure (1VGV, 3BEO, 4FKZ |
| 3 | 3ek2 | - | http://www.google.com/patents/US20160376235 | Pyridone FabI Inhibitors and Uses Thereof | 2016 | P Tonge - US Patent App. 15/130,365, 2016 - Google Patents | ... Selected residues of the saFabI-NADPH-PT173 structure (gray, subunit F) and the centralhydrogen ... Structural differences between diphenyl ether and pyridone ternary complexes. ... residueroot mean square deviation (RMSD) values between the triclosan-bound (PDB code 4ALI ... |
| 4 | 3ndn | - | http://digitalcommons.unl.edu/chemistrydiss/21/ | Purification of Lysine Decarboxylase: A Model System for PLP Enzyme Inhibitor Development and Study | 2011 | LC Zohner - 2011 - digitalcommons.unl.edu | ... This is inferred from the crystal structure of a bond phosphono-analogue of L-alanine (pdb 1BD0). ... contrast to 2.6 ?, for the aspartate oxygen-pyridine nitrogen in the crystal structure of ornithine decarboxylase from Lactobacillus (pdb ID 1ORD), hinting that hydrogen ... |
| 5 | 6axe | 4ex4 | https://aspace.repository.cam.ac.uk/handle/1810/298685 | The glyoxylate shunt as a target for antibacterial intervention in Pseudomonas aeruginosa | 2019 | AC McVey - 2019 - aspace.repository.cam.ac.uk | The structure of MSG from four prokaryotic species has been resolved by X-ray crystallography: E. coli... Mycobacterium marinum (PDB entry 6AXE), and Mycobacterium leprae (PDB entry 4EX4). Also, the E. coli MSG structure has been solved by NMR |
| 6 | 4i1v | - | http://dx.plos.org/10.1371/journal.pone.0129600 | Tethering of Epidermal Growth Factor (EGF) to Beta Tricalcium Phosphate (βTCP) via Fusion to a High Affinity, Multimeric βTCP-Binding Peptide: Effects on … | 2015 | LM Alvarez, JJ Rivera, L Stockdale, S Saini, RT Lee… - PloS one, 2015 - dx.plos.org | ... The TT motif has been implicated in the interactions of dephospho-CoA kinases with the diphosphate group of adenosine di-phosphate (ADP) through hydrogen bonding mechanisms (PDB ID#s: 1JJV, 4I1V; [83]), suggesting a potential role for the TT motif in our binding peptide for interaction with calcium phosphate ... |
| 7 | 3i4e | 3eol, 3p0x, 3e5b, 3oq8 | https://ubir.buffalo.edu/xmlui/handle/10477/79369 | Mechanistic Insights into the Catalytic Mechanism and Inhibition of Mycobacterium Tuberculosis Isocitrate Lyase | 2019 | S Ray - 2019 - ubir.buffalo.edu | an attractive target for drug development. 1.4.3 Structure of ICL Aspergillus nidulans [ PDB ID: 1DQU],67 M. tuberculosis [ PDB ID: 1F61, 1F8I, 1F8M, 5DQL],68- 69 Escherichia coli [ PDB ID:1IGW]70, Burkholderia pseudomallei [ PDB ID: 3I4E (paper |
| 8 | 3rih | 3uve | https://link.springer.com/article/10.3103/S0027131418050085 | The Role of Charged Residues in the Structural Adaptation of Short-Chain Alcohol Dehydrogenase (SDR) from Thermophilic Organisms to High Temperatures | 2018 | AV Popinako, MY Antonov, EY Bezsudnova- Moscow University, 2018 - Springer | Protein structures from PDB database are marked with asterisk 3RIH (Mycobacterium Abscessus tion involving specific patterns of the distribution of dif- ferent residues in the structure , including their distribu- tion on the solvent-accessible molecular surface and in the protein core |
| 9 | 4kgn | - | http://onlinelibrary.wiley.com/doi/10.1111/febs.14120/full | Structural and Biochemical Insights into the 2O Methylation of Pyrimidines 34 in tRNA | 2017 | P Pang, X Deng, Z Wang, W Xie - The FEBS Journal, 2017 - Wiley Online Library | ...Figure 4. The structure and sequence comparison with orthologs from other organisms. (A) Structure overlay of the polypeptide-chain backbones in cross-eyed stereo view (represented as Cα traces) of TtTrmL (green), apo Yibk (cyan, PDB code 4KDZ), EcTrmL (magenta, PDB code 4JAK), Apo HiTrmL (yellow, PDB code 1J85), HiTrmL in complex with SAH (pink, PDB code 1MXI), Burkholderia pseudomallei TrmL in complex with SAH (gray, PDB code 4KGN). ... |
| 10 | 3p96 | - | https://pure.unamur.be/ws/files/51548461/publi_marinum_postprint.pdf | researchportal. unamur. be | 2020 | E Pierson, J Wouters - pure.unamur.be | avium (MavSerB, based on the surrounding residues in PDB structures 5JLR and 5JLP) are The superimposition of MmaSerB2 model with the structures of MavSerB 3P96 and |