We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6WFM | 2020 | 0 |
| 6WHJ | 2020 | 0 |
| 6WOM | 2020 | 0 |
| 6WQM | 2020 | 0 |
| 6WWD | 2020 | 0 |
| 6X9F | 2020 | 0 |
| 6X9N | 2020 | 0 |
| 6XEP | 2020 | 0 |
| 6XR5 | 2020 | 0 |
| 3UK2 | 2011 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3tsc | - | http://www.google.com/patents/US20170098030 | System and method for generating detection of hidden relatedness between proteins via a protein connectivity network | 2015 | Z Frenkel - US Patent App. 15/310,401, 2015 - Google Patents | ... The 20-amino acid fragments are derived from proteins with Protein Data Bank (PDB) codes 3tsc (chain A, starting position ALA 93) and lyxm (chain A, starting position ASP 96). These proteins have similar fold, and the RMSD (root-mean-square-deviation) function between the structures of the fragments is 0.85A, meaning that the structures are very similar, as shown in FIG. 4 ... |
| 2 | 3ecd | 3h7f | http://www.biomedcentral.com/1472-6750/14/93 | A novel serine hydroxymethyltransferase from Arthrobacter nicotianae: characterization and improving catalytic efficiency by rational design | 2014 | W Jiang, L Chen, S Yuan, B Li, Z Liu - BMC biotechnology, 2014 - biomedcentral.com | ... directed mutagenesis was indicated on the three-dimensional structure of AnSHMT, which wasconstructed from the known x-ray structure of Burkholderia Pseudomallei MycobacteriumTuberculosis T.Th.Hb8 (PDB entry 3H7F, 2DKJ and 3ECD) using Swiss ... |
| 3 | 4f82 | - | http://scholar.google.com/https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5022050/ | The Crystal Structure of Peroxiredoxin Asp f3 Provides Mechanistic Insight into Oxidative Stress Resistance and Virulence of Aspergillus fumigatus | 2016 | F Hillmann, K Bagramyan, M Straburger - Scientific , 2016 - ncbi.nlm.nih.gov | ... Asp f3's enzymatic activity on peroxides and structural similarity to the previously characterizedyeast-orthologue ... After failing to find a solution using the entire 4F82 model, flexible loops were ...PDB structure identifiers are 5J9B for WT Asp f3 and 5J9C for the C31S/C61S mutant. ... |
| 4 | 5i0p | - | https://www.sciencedirect.com/science/article/pii/S0021925820000964 | Metallo--lactamase domain-containing protein 2 is S-palmitoylated and exhibits acyl-CoA hydrolase activity | 2021 | MIP Malgapo, JM Safadi, ME Linder- Journal of Biological Chemistry, 2021 - Elsevier | JavaScript is disabled on your browser. Please enable JavaScript to use all the features on this page. Skip to main content Skip to article |
| 5 | 4qtp | - | https://www.biorxiv.org/content/10.1101/674879v3.abstract | The SiaABC threonine phosphorylation pathway controls biofilm formation in response to carbon availability in Pseudomonas aeruginosa | 2020 | WH Poh, J Lin, B Colley, N Mller, BC Goh- BioRxiv, 2020 - biorxiv.org | SiaC crystal 319 structure , and an anti-sigma factor antagonist from Mycobacterium paratuberculosis ( PDB ID: 320 4QTP ; gene ID MAP_0380; Fig 6D) was identified as the closest homologue (Z score of 9.0, an 321 amino-acid sequence |
| 6 | 5dvw | - | http://journal.umpalangkaraya.ac.id/index.php/bjop/article/view/836 | Computational Drug Design against Ebola Virus Targeting Viral Matrix Protein VP30 | 2019 | A Venkatesan, L Ravichandran- Borneo Journal of, 2019 - journal.umpalangkaraya.ac.id | Protein structure preparation The protein crystal structure of Ebola VP30 protein ( PDB code: 5DVW ) with the resolution of 1.75 was retrieved from RCSB Protein Data Bank ( PDB ), a repository providing crystal structures of biotic macromolecules (Berman et al., 2000) |
| 7 | 4oj7 | - | https://www.nature.com/articles/s41598-017-16325-1 | Identification and analysis of seven effector protein families with different adaptive and evolutionary histories in plant-associated members of the | 2017 | R de AB Assis, LC Polloni, JSL Patan, S Thakur- Scientific reports, 2017 - nature.com | Based on this functional analogy, we performed a detailed in silico analysis of the CM-sec three-dimensional (3D) structure. The hit in the structural analysis was from Burkholderia thailandensis (PDB 4oj7.1.A) with 98.2% coverage and 39.74% identity, confirming the typical CM domain fold |
| 8 | 4v6h | - | http://scripts.iucr.org/cgi-bin/paper?dp5099 | X-ray crystal structure of a malonate-semialdehyde dehydrogenase from Pseudomonas sp. strain AAC | 2017 | M Wilding, C Scott, TS Peat, J Newman - Section F: Structural , 2017 - scripts.iucr.org | ... After solving the structure, the difficulties associated with the molecular replacement from thehighly homologous sequence models became clearer, as despite their homology the structuresvary significantly. ... Similarly, PDB entry 4v6h (Seattle Structural Genomics Center ... |
| 9 | 4nbr | - | https://onlinelibrary.wiley.com/doi/abs/10.1107/S2059798318005612 | MRREX: molecular replacement by cooperative conformational search and occupancy optimization on lowaccuracy protein models | 2018 | JJ Virtanen, Y Zhang- Acta Crystallographica Section D, 2018 - Wiley Online Library | et al., 2016, 2017; Shrestha & Zhang, 2015), MR-REX takes advan- tage of this fact by predicting possible inaccurate segments of the structural model and Input and output data The input to MR-REX is a set consisting of structure -factor data, a structure file in PDB format and |
| 10 | 2kn9 | - | http://www2.ic.uff.br/PosGraduacao/Dissertacoes/477.pdf | Metodos Computacionais para o Calculo de Estruturas de Proteinas: Aproximando o Problema Molecular de Geometria de Distancias de Dados de Ressonancia Magnetica Nuclear | 2010 | PC Nucci - ic.uff.br | ... PMGD Problema Molecular de Geometria de Dist?ncias PMGDD Problema Molecular de Geometria de Dist?ncias Discreto BP Branch-And-Prune RMN Resson?ncia Magn?tica NuclearPDB Protein Data Bank pH Potencial Hidrogeni?nico 12 Page 14. Cap??tulo 1 Introdu??ao ... |