We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7SZP | 2021 | 0 |
| 7SZS | 2021 | 0 |
| 7SZV | 2021 | 0 |
| 7T24 | 2021 | 0 |
| 7T29 | 2021 | 0 |
| 7T35 | 2021 | 0 |
| 5SCP | 2022 | 0 |
| 3R9Q | 2011 | 0 |
| 3QYR | 2011 | 0 |
| 5SCO | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3iml | - | http://journals.iucr.org/m/issues/2014/04/00/lz5002/ | Structure and function study of the complex that synthesizes S-adenosylmethionine | 2014 | B Murray, SV Antonyuk, A Marina, SM Van Liempd - IUCrJ, 2014 - journals.iucr.org | ...(b) Superposition of apo-MAT([alpha]2)2 from Burkholderia pseudomallei (PDB entry 3iml , Baugh et al., 2013[Baugh L. et al. (2013). Plos One, 8, e53851.], in pink) with the SAMe-bound MAT([alpha]2)2 (PDB entry 2p02 in blue);... |
| 2 | 3uf8 | 3vaw | http://www.intelligentmodelling.org.uk/Projects/lingwei/lingwei-final.pdf | A Research on the Use of Voxel Tessellations in the Representation, Investigation and Identification of Protein Surface Atoms and Binding Sites | 2012 | LL Wei - 2012 - intelligentmodelling.org.uk | ... 110 5-13 Visualisations for identified dock site of protein 3UF8 from both RCSB PDB and thevoxel-based method, ... The increasing number of entries being deposited into the Protein DataBank (PDB) ... al, 2007) gives a comprehensive ordering of all proteins of known structure ... |
| 3 | 3swo | 3sf6 | http://scripts.iucr.org/cgi-bin/paper?dz5351 | High-resolution structures of cholesterol oxidase in the reduced state provide insights into redox stabilization | 2014 | E Golden, A Karton, A Vrielink - Acta Crystallographica Section D: …, 2014 - scripts.iucr.org | ... This state also shows the presence of multiple conformations of the aromatic triad residues whichwere not observed in the aerobic 2-propanol structure. ... Proc. Natl Acad. Sci. USA, 111, 3389-3394.] ;PDB entries 3swo and 3sf6 (Seattle Structural Genomics Center for ... |
| 4 | 3meq | - | http://d-nb.info/1035623692/34 | Reaction and protein engineering employing a carbonyl reductase from candida parapsilosis | 2012 | A Jakoblinnert, UDMB Ansorge-Schumacher - 2012 - d-nb.info | ... Four X-ray templates were selected for modeling the CPCR1 structure (349aa): Yeast ADH I from S. cerevisiae with bound trifluorethanol (347 residues with quality score 0.522, PDB ID 2HCY), ADH from Brucella melitensis (341 residues with quality score 0.590, PDB ID 3MEQ), ... |
| 5 | 4djt | - | https://academic.oup.com/nar/advance-article-abstract/doi/10.1093/nar/gkz478/549... | PatchSearch: a web server for off-target protein identification | 2019 | J Rey, I Rasolohery, P Tuffry, F Guyon- Nucleic acids, 2019 - academic.oup.com | 4djt 22.3 0.376 positive 10.378 The patch was extracted around ADP in the 1lkx myosin structure . Structural similarities between the patch and the entire surface of 40 PDB structures known to be able to interact, ie 'positive', or not, 'negative', with ADP or similar ligands |
| 6 | 3lgj | 3pgz | http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6558165 | Comparative modelling and in-silico drug designing | 2013 | D Kumar, A Sarvate, S Singh? - IEEE Conference on Information & Communication Technologies (ICT), 2013 - ieeexplore.ieee.org | ... Model No. Template PDB ID Percentage of residues in most favoured region of Ramachandran plot Z- score 1 1Z9F 91 -4.9 2 3TQY 93 -4.53 3 1SRU 90 -3.23 ... 8 3PGZ 88 -4.27 9 3ULL 92 -4.06 10 2DUD 95 -4.13 11 1SE8 94 -4.33 12 3LGJ 94 -5.34 13 5MDH 90 -1.48 ... |
| 7 | 3grk | - | http://onlinelibrary.wiley.com/doi/10.1002/pro.2418/abstract | Crystal structures and kinetic properties of enoyl-acyl carrier protein reductase I from Candidatus Liberibacter asiaticus | 2014 | L Jiang, Z Gao, Y Li, S Wang, Y Dong - Protein Science, 2014 - Wiley Online Library | ... henselae (BhFabI, PDB code 4EIT), E. coli (EcFabI, PDB code 2FHS or 1DFI,6,28 B. melitensis (BmFabI, PDB code 3GRK), S. aureus ... reductase glucose-ribitol dehydrogenase from Brucella melitensis (PDB code: 3GRK) is used as the search model. ... |
| 8 | 4noz | - | http://www.sciencedirect.com/science/article/pii/S2213231717301416 | Functional and evolutionary characterization of Ohr proteins in eukaryotes reveals many active homologs among pathogenic fungi | 2017 | DA Meireles, RM Domingos, JW Gaiarsa, EG Ragnoni - Redox biology, 2017 - Elsevier | ... (A) For Ohr, 4NOZ secondary structure from Burkholderia cenocepacia ... (C) Selected Ohr-likesequences deposited in PDB database were aligned with ... For Ohr-like, secondary structure 2PN2from Psychrobacter arcticus 273-4 (Pa_Ohr_like) was used to guide the alignment. ... |
| 9 | 3oib | - | http://search.proquest.com/openview/eb228335c85968dacf18bd20cd94cc39/1?pq-origsi... | Identification and characterization of cholesterol metabolism related genes and gene products from Mycobacterium tuberculosis | 2015 | M Yang - 2015 - search.proquest.com | ... Cholesterol has indispensible structural and regulatory roles in humans. ... N-terminis. C-terminus.Figure 2-1. Typical human homotetrameric ACAD structure. (a) Homotetrameric assembly of.human MCAD (PDB code: 1EGC) with four FAD molecules (yellow spheres) and four. ... |
| 10 | 3v8h | - | http://journal.frontiersin.org/article/10.3389/fcimb.2017.00266/abstract | Inactivation of the Thymidylate Synthase thyA in Non-typeable Haemophilus influenzae Modulates Antibiotic Resistance and Has a Strong Impact on Its | 2017 | I Rodrguez-Arce, S Mart, B Euba- Frontiers in cellular, 2017 - journal.frontiersin.org | Antibacterial treatment with cotrimoxazol (TxS), a combination of trimethoprim and sulfamethoxazole, generates resistance by, among others, acquisition of thymidine auxotrophy associated with mutations in the thymidylate synthase gene thyA, which can modify the biology ... |