We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5b8i | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6127630/ | Wen-Luo-Tong Decoction Attenuates Paclitaxel-Induced Peripheral Neuropathy by Regulating Linoleic Acid and Glycerophospholipid Metabolism Pathways | 2018 | F Wu, W Xu, B Deng, S Liu, C Deng, M Wu- Frontiers in, 2018 - ncbi.nlm.nih.gov | The structures of proteins were obtained from the Protein Data Bank ( PDB , https://www.rcsb.org/). Protein structures not available from PDB was homology modeled by (https://www.swissmodel. expasy.org) docking was carried out with Discovery Studio 3.5 (BIOVIA, USA) Table 6 Results of docking Proteins PDB ID pcat1 5b8i *Template of homology modeling. |
| 2 | 4yk1 | - | http://www.superfri.org/superfri/article/view/171 | High performance computing with coarse grained model of biological macromolecules | 2018 | EA Lubecka, AK Sieradzan, C Czaplewski- Supercomputing, 2018 - superfri.org | The source code in the UNRES package with Fortran 90 has the following directory structure : unres (main program modules, source NucB (110 residues, single chain, PDB code: 5OMT), BID domain of Bep6 (137 residues, single chain, PDB code: 4YK1 ), CDI complex |
| 3 | 3m1x | 3gp3 | https://pdfs.semanticscholar.org/b88b/677bceb020a7b157a866e774007d27e673e9.pdf | Expanding molecular modeling and design tools to non-natural sidechains. | 2012 | D Gfeller, O Michielin, V Zoete - J Comput Chem. 2012 Jul 5;33(18):1525-35. | Supplementary Figures 1JBO, 1KTP, 1PHN, 1QGW, 1XF6, 1XG0, 2BV8, 2C77, 2V8A, 2VJH, 2VJT, 3BRP, 3DBJ, 3O18, 3O2C |
| 4 | 4g7f | - | http://www.academiajournals.com/s/8-Tesis-Sotelo-Baltazar-Carlos-Alexis.pdf | HUMANIDADES, CIENCIA, TECNOLOGA E INNOVACIN EN PUEBLA | 2019 | CAS BALTAZAR, UNMM INMUNIZADO, C ORAL - academiajournals.com | Page 1. HUMANIDADES, CIENCIA, TECNOLOGA E INNOVACIN EN PUEBLA ISSN 2644-0903 online VOL. 2, NO. 1, 2020 WWW.ACADEMIAJOURNALS.COM TRABAJO DE INVESTIGACIN AUSPICIADO POR EL CONVENIO CONCYTEP-ACADEMIA JOURNALS |
| 5 | 3fvb | 4di0 | https://tspace.library.utoronto.ca/handle/1807/69450 | Understanding the Encapsulins | 2015 | D Radford - 2015 - tspace.library.utoronto.ca | ....The Dps-like bacterioferritin-like family was defined as the set of proteins similar to the Brucella melitensis biovar Abortus 2308 bacterioferritin [PDB accession: 3FVB] .. Lastly the rubrerythrin-like family was defined as the set of proteins similar to the Burkholderia pseudomallei rubrerythrin [PDB accession: 4DI0], and N-terminal domains of the Ferroglobus placidus DSM 10642 encapsulin ... |
| 6 | 3hn6 | - | https://ir.canterbury.ac.nz/handle/10092/13607 | Characterisation of NagA and NagB from methicillin-resistant Staphylococcus aureus. | 2017 | JS Davies - 2017 - ir.canterbury.ac.nz | Borrelia burgdorferi ( PDB : 3HN6 ). Described as a having a three-layer // sandwich fold shape information and build ab initio models depicting the 3-D structure of MRSA NagA in solution Given the divergence of active site architecture and metal |
| 7 | 4e51 | - | https://tel.archives-ouvertes.fr/tel-02484790/ | Incorporation de la beta alanine dans des polypeptides | 2019 | G Nigro - 2019 - tel.archives-ouvertes.fr | 89 I. 2 Structures de la MetRS cocristallise avec des analogues de la mthionine : Sites de reconnaissance des acides aminés de trois AARS de classe II. A : HisRS de Burkholderia thailandensis (4E51), B : |
| 8 | 4lgv | - | http://repositorio.unicamp.br/handle/REPOSIP/320861 | Glicose 6-fosfato desidrogenase como alvo molecular para desenvolvimento de frmacos: estudos estruturais e identificao de inibidores | 2016 | GF Mercaldi - 2016 - repositorio.unicamp.br | ... Comparison of this structure with the human homologous enzyme Page 10. ... contribute to improve the structural and functional knowledge about the G6PDHs, an enzyme ... A) Orientao do substrato na estrutura do complexo ternrio ( PDB 5AQ1) obtido pelo nosso grupo. ... |
| 9 | 4giv | - | https://open.library.ubc.ca/collections/ubctheses/24/items/1.0340574 | Investigating the molecular architecture of yeast histone acetyltransferase complexes | 2016 | D Setiaputra - 2016 - open.library.ubc.ca | Learning, knowledge, research, insight: welcome to the world of UBC Library, the second-largest academic research library in Canada. |
| 10 | 3meq | - | http://pubs.acs.org/doi/abs/10.1021/jacs.7b12369 | Activity-Related Microsecond Dynamics Revealed by Temperature-Jump Forster Resonance Energy Transfer Measurements on Thermophilic Alcohol | 2018 | MB Vaughn, J Zhang, TG Spiro, RB Dyer- Journal of the, 2018 - ACS Publications | protein motions. figure Figure 1. Structure of ht-ADH in green with NADH and alcohol in cyan. The three tryptophan residues are yellow. This structure was created from an overlap of PDB : 1RJW and 3MEQ . The steady state |