We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TM6 | 2022 | 0 |
| 7TM5 | 2022 | 0 |
| 7TM4 | 2022 | 0 |
| 7TM0 | 2022 | 0 |
| 7TLZ | 2022 | 0 |
| 7TLY | 2022 | 0 |
| 7TJ3 | 2022 | 0 |
| 7TI7 | 2022 | 0 |
| 7TCM | 2022 | 0 |
| 7TAT | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3kre | - | http://scripts.iucr.org/cgi-bin/paper?fw5260 | Cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of SAICAR synthase from Streptococcus suis serotype 2 | 2010 | X Cheng, G Lu, J Qi, H Cheng, F Gao? - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2010 - scripts.iucr.org | ... F62, 335-339.] ), Ehrlichia chaffeensis (PDB code 3kre ; Seattle Structural Genomics Center for Infectious Disease, unpublished work) and Pyrococcus horikoshii OT3 (Manjunath et al., 2010 [Manjunath, K., Jeyakanthan, J., Nakagawa, N., Shinkai, A., Yoshimura, M., Kuramitsu, S ... |
| 2 | 6bla | - | https://journals.plos.org/plospathogens/article?rev=2&id=10.1371/journal.ppat.10... | Recognition of a highly conserved glycoprotein B epitope by a bivalent antibody neutralizing HCMV at a post-attachment step | 2020 | X Ye, H Su, D Wrapp, DC Freed, F Li, Z Yuan- PLoS, 2020 - journals.plos.org | A 1.8 crystal structure of 325 Fab in complex with the peptide epitope revealed the molecular determinants of 325 binding to gB A molecular replacement solution was found in PHASER [67] by using a search ensemble generated from PDB IDs: 6BLA and 6DDM. |
| 3 | 3dpi | - | http://www.sciencedirect.com/science/article/pii/S1476927116301128 | Protein-protein interaction and molecular dynamics analysis for identification of novel inhibitors in Burkholderia cepacia GG4 | 2016 | M Gupta, R Chauhan, Y Prasad, G Wadhwa - Biology and Chemistry, 2016 - Elsevier | ... Homology based protein structure prediction employs submission of query protein sequenceto BLASTp against PDB database for identifying ... 3DPI, 2PZ8 and 1NSY. ... The dimensions of bindingspace on three dimensional structure of protein were identified in DockBlaster itself. ... |
| 4 | 4noz | - | http://www.sciencedirect.com/science/article/pii/S2213231717301416 | Functional and evolutionary characterization of Ohr proteins in eukaryotes reveals many active homologs among pathogenic fungi | 2017 | DA Meireles, RM Domingos, JW Gaiarsa, EG Ragnoni - Redox biology, 2017 - Elsevier | ... (A) For Ohr, 4NOZ secondary structure from Burkholderia cenocepacia ... (C) Selected Ohr-likesequences deposited in PDB database were aligned with ... For Ohr-like, secondary structure 2PN2from Psychrobacter arcticus 273-4 (Pa_Ohr_like) was used to guide the alignment. ... |
| 5 | 6wpt | - | https://hal.archives-ouvertes.fr/hal-03257466/document | Hyaluronic Acid-2-Deoxy-D-Glucose Conjugate Act as a Promising Targeted Drug Delivery Option for the Treatment of COVID-19 | 2021 | R Thirumalaisamy, V Aroulmoji- International, 2021 - hal.archives-ouvertes.fr | of 2DG and HA-2DG was submitted to Online SMILES convertor and Structure file generator proteases Mpro (6LU7), papain like protease PLpro (6W9C), spike protein ( 6WPT ), RNA dependent RNA polymerase (6M71) was retrieved from RCSB PDB database (https |
| 6 | 6mg6 | - | https://www.researchsquare.com/article/rs-561386/latest.pdf | Genome Mining, Phylogenetic and Structural Analysis of Bacterial Nitrilases for the Biodegradation of Nitrile Compounds | 2021 | R Salwan, V Sharma, S Das - 2021 - researchsquare.com | ( PDB :1EMS), Helicobacter pylori ( PDB : 6MG6 ), Mus musculus ( PDB : 2W1V), Pyrococcus abyssi ( PDB : 3WUY) has already been reported. However, with most of the nitrilases, the crystal structure had been resolved, came |
| 7 | 3rr2 | - | http://www.sciencedirect.com/science/article/pii/S1570963913004147 | Structural and biochemical analyses of< i> Microcystis aeruginosa</i> O-acetylserine sulfhydrylases reveal a negative feedback regulation of cysteine biosynthesis | 2014 | M Lu, BY Xu, K Zhou, W Cheng, YL Jiang? - Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, 2014 - Elsevier | ... The sequences are (PDB codes in parentheses) Mycobacterium tuberculosis OASS (2Q3D), Haemophilus influenzae OASS (1Y7L), Salmonella typhimurium OASS (1OAS), Mycobacterium marinum Atcc Baa-535 OASS (3RR2), Thermotoga maritima OASS (3FCA), Arabidopsis ... |
| 8 | 3pgz | 3lgj | http://www.freepatentsonline.com/y2015/0191709.html | MODIFIED HELICASES | 2015 | A Heron, J Clarke, R Moysey… - US Patent …, 2015 - freepatentsonline.com | ... In order to assess whether a suitable protein structure exists to use as a “template” to build aprotein model, a search is performed on the protein data bank (PDB) database. ... The sequencealignment and template structure are then used to produce a structural model of the ... |
| 9 | 3qh4 | - | http://scholarbank.nus.edu/handle/10635/37588 | Characterization of Mycobacterial Estrases/Lipases using combined Biochemical and Computational Enzymology | 2012 | A SHUKLA - 2012 - scholarbank.nus.edu | ... Page 12. 3 Lists of Abbreviations THL: Tetrahydrolipstatin pNP: para-nitrophenol PDB: ProteinData Bank PMSF: phenylmethanesulfonylfluoride E600: diethyl-p-nitrophenylphosphate EC : Enzyme classifier TAGs: Triacylglycerol MTB: Mycobacterium tuberculosis ... |
| 10 | 5t8t | - | https://papers.ssrn.com/sol3/papers.cfm?abstract_id=4651464 | Characterization of a Plant S-Adenosylmethionine Synthetase from Acacia Koa | 2023 | D Borthakur, JT Carrillo- Available at SSRN 4651464 - papers.ssrn.com | structural 8 changes due to mutagenesis (Fig. 8). Species name and PDB numbers of the 9 structures Neisseria gonorrhoeae ( 5T8T ), Lactiplantibacillus plantarum (7R3B). From eukarya |