We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 9ZK5 | 2025 | 0 |
| 7U5Q | 2022 | 0 |
| 7U5F | 2022 | 0 |
| 7U56 | 2022 | 0 |
| 7U4H | 2022 | 0 |
| 7U35 | 2022 | 0 |
| 4K6C | 2013 | 0 |
| 4K3Z | 2013 | 0 |
| 7U2T | 2022 | 0 |
| 7U2Q | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4f40 | 4gie | https://www.mdpi.com/1424-8247/18/10/1489 | Computational Investigation of the Potential Antileishmanial Mechanism of the Nitroindazole Derivative VATR131 | 2025 | O Casanova-Alvarez, N Mollineda-Diogo- Pharmaceuticals, 2025 - mdpi.com | structural damage to the parasite, further supporting their therapeutic potential [17]. VATR131s leishmanicidal activity, causing both structural and ultrastructural damage to the parasite [ |
| 2 | 5ha4 | - | https://kronika.ac/wp-content/uploads/10F.pdf | Computational modelling, molecular docking, and molecular dynamics simulation studies of Enterococcus faecalis diaminopimelate epimerase | 2024 | J Chaudhary, P Sharma, N Singh, VK Srivastava - kronika.ac | .nlm.nih.gov] and converted to PDB format using Pymol software. of EfDapF was opened as PDB format, and polar hydrogen Co-crystal structure of DapF from C.glutamicum ... The available crystal structures of DapF from different organisms such as E.coli [PDB entry: 4IJZ], Bacillus anthracis [PDB entry: 2OTN], Acinetobacter baumannii [PDB entry: 5HA4], |
| 3 | 3sth | - | http://search.proquest.com/openview/1229867efa30e82724b2b406c14ae6d7/1?pq-origsi... | Deciphering the mechanism and function of stage-specific protein association with the membrane cytoskeleton of Toxoplasma gondii | 2017 | R Dubey - 2017 - search.proquest.com | Crystal structure data of TgGAPDH1 Crystal structure data collection and refinement statistics of Toxoplasma GAPDH1, PDB code 3STH Crystallographic structures of the seven selected GAPDH proteins are solved and deposited in PDB . 62 Structure of TgGAPDH1 protein |
| 4 | 5b8i | 6tz8 | https://dukespace.lib.duke.edu/bitstreams/8ce0d8e6-fc10-4ee6-abf1-af6eb975dd0f/d... | Development of Anti-Infectives Targeting Bacterial LpxH or Fungal FKBP12-Calcineurin | 2024 | PA Dome - 2024 - dukespace.lib.duke.edu | There are, however, structural differences between human and fungal calcineurin that may be exploited to design calcineurin inhibitors that maintain antifungal activity while abolishing |
| 5 | 5urb | 6bqz, 5e3i | https://trendsinpharmacy.org/index.php/pub/article/view/44 | Bioinformatic and Experimental Evaluation of Compounds Targeting Acinetobacter baumannii | 2025 | E Mert, EY Duranay- Trends in Pharmacy, 2025 - trendsinpharmacy.org | Analysis of the crystal structure of the target protein with methionine ( PDB : 5URB ) revealed produced results highly consistent with the crystal structure ( 5URB ), confirming Tyr12, Leu10, |
| 6 | 4lfy | - | http://indigo.uic.edu/handle/10027/21340 | Dihydroorotase from Bacillus anthracis and Staphylococcus aureus | 2016 | AJ Rice - 2016 - indigo.uic.edu | 2.1 Introduction Class II DHOase from E. coli has been studied at length, producing many apo and complex crystal structures (Table I). The structure revealed DHOase is a homodimer zinc metalloenzyme Organism PDB Ligand Modification Burkholderia cenocepacia 4LFY Apo |
| 7 | 6uww | 6aqg | http://www.journals.chemsociety.org.ng/index.php/jcsn/article/view/1103 | VIRTUAL SCREENING AND MACHINE LEARNING-BASED IDENTIFICATION OF TROPICAL PLANT METABOLITES WITH MULTIPLE Mycobacterium ulcerans | 2025 | CE Duru, CN Nwofor- Journal of Chemical, 2025 - journals.chemsociety.org.ng | structure (obtained from the Protein Data Bank, PDB ) superimposed onto the X-ray-resolved crystal structure of the For 6UWW and 6AQG, structural optimization efforts should |
| 8 | 3gwc | - | https://pdfs.semanticscholar.org/756c/21ba7ab35e0016d697910450710130b7af99.pdf | Similarity in the Amino Acid Sequences of Mycobacterium tuberculosis Protein Targets Involved in Binding Sites of Docking with Thiacetazone | 2016 | M Mafakheri, S Sardari- Pharm Anal Acta, 2016 - pdfs.semanticscholar.org | reviewed and well known M. tuberculosis protein target was chosen (Table 1) then they were downloaded in pdb format from 68 3GWC Transferase -6.24 RRRHHHHM 21. A Structural View of Biology, An Information Portal to 124286 Biological Macromolecular Structures . 22 |
| 9 | 6u94 | - | https://www.biorxiv.org/content/10.1101/2021.08.17.456619.abstract | Genome sequencing of 196 Treponema pallidum strains from six continents reveals additional variability in vaccine candidate genes and dominance of Nichols clade | 2021 | NAP Lieberman, MJ Lin, H Xie, L Shretha, T Nguyen- bioRxiv, 2021 - biorxiv.org | guided by the top 1-7 templates for each target. We used the following templates in modelling each target: TP0136 used 4a2l and 5oj5; TP0326 used 4k3b and 5d0o; TP0548 used 6h3i; TP0966 used 1yc9, 3d5k, 4k7r, 4mt0, 4mt4, 5azs, and 6u94; TP0967 used 1yc9, 3d5k, 5azp, 5azs, and 6u94. |
| 10 | 3dah | - | http://escholarship.org/uc/item/29g595sg.pdf | Modeling of Protein Flexibility and Inter-Molecular Interactions: Applications to Computer-Aided Drug Design and Discovery | 2012 | R Ai - 2012 - escholarship.org | ... Page 22. xxi Figure 5.1 .95 Summary of ligand binding capacity and subdomains of HSA using PDB structure 1E7E. Long-chain fatty acids are depicted in VDW representation using VMD 1.8.7. ... |