We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7MIW | 2021 | 0 |
| 7MYQ | 2021 | 0 |
| 7MYS | 2021 | 0 |
| 7N1L | 2021 | 0 |
| 3TRR | 2011 | 0 |
| 7RCR | 2021 | 0 |
| 7RHE | 2021 | 0 |
| 7RZO | 2021 | 0 |
| 7S5E | 2021 | 0 |
| 7S5M | 2021 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5v6d | - | https://papers.ssrn.com/sol3/papers.cfm?abstract_id=3188389 | A Centipede Toxin Family Defines a New Ancient Class of CS Defensins | 2018 | TS Dash, T Shafee, PJ Harvey, C Zhang- Available at SSRN, 2018 - papers.ssrn.com | structure of Sm2 against all structures of proteins contained within the Protein Data Bank ( PDB ) that are composed of more than 30 amino acids Thus, the minimal cysteine motif is by itself sufficient to generate a stable CS structure . Although the 2ds-CS architecture has |
| 2 | 3k9h | - | http://www.jbc.org/content/early/2015/06/08/jbc.M115.649632.short | Molecular anatomy of ParA-ParA and ParA-ParB interactions during plasmid partitioning | 2015 | A Volante, JC Alonso - Journal of Biological Chemistry, 2015 - ASBMB | ... Superimposition of full-length monomer structures of δ (in green) and T thermophilus Soj (ParA-Sm) in blue (PDB: 2BEK); with P1-ParA in yellow (PDB: 3EZ6); and with TP228-ParF (ParA-Sm) in orange (PDB: 3K9H)... |
| 3 | 3ej0 | - | http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6252744 | Predicting protein-ligand binding site with differential evolution and support vector machine | 2012 | GY Wong, FHF Leung, SH Ling - 2012 International Joint Conference on Neural Networks (IJCNN), 2012 - ieeexplore.ieee.org | ... Predicted quaternary structures were used rather than the tertiary structures provided in Protein Data Bank (PDB) [2]. The attributes used in SVM are selected based on the properties of protein in four different areas: ... 1AHB 1BXQ 1M5R 2ZJA 3EJ0 1C1H 1DAK 1MKA 2ZU3 3F47 ... |
| 4 | 5unb | - | https://ora.ox.ac.uk/objects/uuid:bd3dc30e-2835-45d8-b1ba-dafa2f552e98/download_... | Janus kinase inhibition for autoinflammation in DNASE2 deficiency | 2019 | S Nanthapisal, A Cavounidis, H Takeshita- Journal of Allergy and, 2019 - ora.ox.ac.uk | Structural modeling Structural models and figures were prepared by using the ICM software package (MolSoft, San Diego, Calif). A homology model for human DNase II was prepared by using the existing structure from B thailandensis ( PDB 5UNB ) as the model template |
| 5 | 5ids | - | http://digitalcommons.augustana.edu/biolmruber/28/ | Mrub_2052, Mrub_0628, and Mrub_2034 genes are predicted to be orthologous to b0688, b2039, and b3789 genes found in Escherichia coli, which are involved in | 2017 | JP Hartnett, D Scott - 2017 - digitalcommons.augustana.edu | ... (Finn et al.). Protein Data Bank ( PDB ) (Berman et. al., 2000) is a curated collection of crystalized proteins.If a PDB hit is obtained for a query sequence, then 3-D structure neighbors, Page 7. 6 ... PDB protein database 5IDS Glucose-1-phosphate Thymidylyltransferase ... |
| 6 | 3qhx | - | http://pubs.acs.org/doi/abs/10.1021/acs.jafc.7b02391 | Structural Insights into Substrate Specificity of Cystathionine -Synthase from Corynebacterium glutamicum | 2017 | HY Sagong, KJ Kim - Journal of agricultural and food chemistry, 2017 - ACS Publications | ... protein mass was 2.13 3 Da 1 with a solvent content of approximately 42.27%.(17) The structure of CgMetB was determined by molecular replacement with the CCP4 version of MOLREP,(18) with the structure of MetB from M. ulcerans ( PDB code 3QHX ) used as ... |
| 7 | 3u0g | - | https://link.springer.com/article/10.1007/s00253-020-10369-6 | Structural insight into the substrate specificity of PLP fold type IV transaminases | 2020 | EY Bezsudnova, VO Popov, KM Boyko- Applied Microbiology and, 2020 - Springer | Due to the rigid structure of the -sheet, the residues constituting it form a peculiar mold for substrate binding. The interdomain loop (light blue) and -turn (black) of the large domain of the first subunit confine the P-pocket from the other sides PDB ID:*. X-strand 3U0G |
| 8 | 6nb8 | - | https://saudijournals.com/media/articles/SIJB_36_143-153.pdf | Drug Targets for Corona Virus (COVID-19): A Systematic Review | 2020 | K Jayakumar - 2020 - saudijournals.com | to neutralize it, and their structures are also available ( PDB IDs: 6NB6, 6NB7, and 6NB8 .The monoclonal antibody, m396, has a competitive role for RBD binding ( PDB ID: 2DD8 However, the structure is highly variable among different members of the CoV family |
| 9 | 3ijp | - | http://search.proquest.com/openview/fe30810b9baec6939869fd9046280643/1?pq-origsi... | MOLECULAR MODELING AND DOCKING STUDIES OF DIHYDRODIPICOLINATE REDUCTASE ENZYME (DHDPR) OF STREPTOCOCCUS SUIS AND … | 2014 | ON Erick, MN Padmanabhan… - Advances in …, 2014 - search.proquest.com | ... The current study hypothesized to model structure for DapB gene encoding dihydrodipicolinatereductase enzyme ... et al., 1997 ; PDB:1VM6 (Joint Centre for Structural Genomics) and PDB:3IJP(Seattle Structural ... Structural and mutagenic analysis of relaxed nucleotide specificity. ... |
| 10 | 6cw5 | - | https://ubipayroll.com/earthline/index.php/ejcs/article/view/282 | In silico Structural Modelling of Ribokinase from Salmonella Typhi | 2021 | H Abubakar, Y Ndatsu, AD Musa, C Ogbiko- Earthline Journal of, 2021 - ubipayroll.com | done to check the stereochemical features of the predicted 3-dimensional structure of the BLASTp showed low identity of 40% (Table 1) with other proteins deposited in PDB and conserved domain (Figure 1). Multiple sequence alignment between the query, 6CW5 , 2FV7, 1VM7 |