We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TM8 | 2022 | 0 |
| 7TM7 | 2022 | 0 |
| 7TM6 | 2022 | 0 |
| 7TM5 | 2022 | 0 |
| 7TM4 | 2022 | 0 |
| 7TM0 | 2022 | 0 |
| 7TLZ | 2022 | 0 |
| 7TLY | 2022 | 0 |
| 7TJ3 | 2022 | 0 |
| 7TI7 | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3s6d | - | http://www.sciencedirect.com/science/article/pii/S1570963916301844 | Structural insights from a novel invertebrate triosephosphate isomerase from Litopenaeus vannamei | 2016 | AA Lopez-Zavala, JS Carrasco-Miranda - et Biophysica Acta (BBA , 2016 - Elsevier | ... Glycolysis is one of the most regulated metabolic pathways, however little is known about thestructural mechanisms for its regulation in non-model ... Using the DALI server [53] to look for similar structures, the root mean square deviation (RMSD) for backbone carbons between LvTIM and...P. falciparum (1WOB) 1.5 A, Coccidioides immitis (3S6D) 2.1 A |
| 2 | 4lgv | - | http://search.proquest.com/openview/b04b4d65a244a74db03c8611b0eaa999/1?pq-origsi... | Multi-Scale Simulation of Electrostatic Channeling | 2018 | Y Liu - 2018 - search.proquest.com | Figure 2-6 (a) Illustration of the proposed channeling complex using a poly(lysine) bridge as an electrostatic surface between hexokinase (HK; PDB 3VF6) and glucose-6-phosphate dehydrogenase (G6PDH; PDB 4LGV). (b) Experimental reaction scheme used to study electrostatic channeling of the charge intermediate (glucose-6-phosphate) across a cationic peptide bridge. |
| 3 | 3slg | - | https://iris.unipv.it/bitstream/11571/1214880/2/PhD%20Thesis%20Savino.pdf | Applying structural enzymology to understand the reactivity of different biocatalysts | 2017 | C Binda - iris.unipv.it | Structural biology applied to enzymes allows to describe in detail the architecture of their active sites and uncover the This method necessarily can be applied when the structure of a protein homologous to the target one is already available (ie present in the PDB database or |
| 4 | 3dmo | - | http://permalink.lanl.gov/object/tr?what=info:lanl-repo/lareport/LA-UR-11-04078 | Achievements of structural genomics | 2011 | TC Terwilliger - 2011 - permalink.lanl.gov | ... Semi-automated Structure determination ~ ... PDB 3BV6, 2275 AA Metallo protein - ... l University ofIowa 2 University of Michigan Medical School Crystal structures of the FDTS-FAD- 3The JointCenter for Structural Genomics at GNF 4SSRL, Stanford University dUMP complex. ... |
| 5 | 5umh | - | https://scholarcommons.sc.edu/etd/4126/ | Structural and Functional Studies of Proteins from the Agricultural Pests Tetranychus Urticae and Aspergillus Fumigatus | 2017 | C Schlachter - 2017 - scholarcommons.sc.edu | Structural homologs of TuDioxygenase identified by the Dali server [51] were dioxygenases such as: SACTE_2871 (PDB code 4ILT, 153/155 residues aligned, RMSD 1.8 Å); catechol 1,2-dioxygenase from Burkholderia multivorans (PDB code 5UMH, 167/307 residues aligned |
| 6 | 6cw5 | - | https://ubipayroll.com/earthline/index.php/ejcs/article/view/282 | In silico Structural Modelling of Ribokinase from Salmonella Typhi | 2021 | H Abubakar, Y Ndatsu, AD Musa, C Ogbiko- Earthline Journal of, 2021 - ubipayroll.com | done to check the stereochemical features of the predicted 3-dimensional structure of the BLASTp showed low identity of 40% (Table 1) with other proteins deposited in PDB and conserved domain (Figure 1). Multiple sequence alignment between the query, 6CW5 , 2FV7, 1VM7 |
| 7 | 3mx6 | - | http://search.proquest.com/openview/61c4474dc9c0d8c2eab66e35f99716fb/1?pq-origsi... | Methionine aminopeptidase as a target for the discovery of novel antibacterial agents | 2016 | C Chen - 2016 - search.proquest.com | ... 14. Figure 2-1. Crystal structure of RpMetAP I (PDB ID: 3MX6, Edwards T. et. al., 2010). Metalions shown in the active site as spheres are two Mn (II) ions. 15. Materials and Methods.Screening of suitable induction conditions for expression of RpMetAp I. ... |
| 8 | 5ids | - | http://digitalcommons.augustana.edu/biolmruber/28/ | Mrub_2052, Mrub_0628, and Mrub_2034 genes are predicted to be orthologous to b0688, b2039, and b3789 genes found in Escherichia coli, which are involved in | 2017 | JP Hartnett, D Scott - 2017 - digitalcommons.augustana.edu | ... (Finn et al.). Protein Data Bank ( PDB ) (Berman et. al., 2000) is a curated collection of crystalized proteins.If a PDB hit is obtained for a query sequence, then 3-D structure neighbors, Page 7. 6 ... PDB protein database 5IDS Glucose-1-phosphate Thymidylyltransferase ... |
| 9 | 3tf6 | - | http://itempdf74155353254prod.s3.amazonaws.com/6159143/DLSCORE__A_Deep_Learning_... | DLSCORE: A Deep Learning Model for Predicting Protein-Ligand Binding Affinities | 2018 | M Hassan, DC Mogollon, O Fuentes, S Sirimulla - 2018 - .s3.amazonaws.com | In designing DLSCORE architecture , we divided the entire method into two parts 2 PDB IDs 4rqv, 4tkb, 1met, 5c5t, 3p8p, 2iuz, 4kfq, 3ifl, 4p6c, 1oyt, 4ibg, 3uri, 3t01, 1o5e, 3qgy, 3kgu, 2h21, 3agl, 3n7a, 1qkt, 1o2j, 1azm, 1afk, 1g54, 3nu3, 2yhw, 4mme, 2f94, 3vha, 3tf6 , 2pvj, 1fkb |
| 10 | 4lsm | 6ok4, 4k9d | https://tede2.uepg.br/jspui/handle/prefix/3244 | Estudos estruturais das enzimas urocanato hidratase de Trypanosoma cruzi, gliceraldedo-3-fosfato desidrogenase de Schistosoma mansoni e glicose-6-fosfato-1 | 2020 | S Boreiko - 2020 - tede2.uepg.br | the conformation of monomers A and C, which were explored to understand structural changes in 1-Epimerase, also part of the glycolytic pathway, had its structure modeled by e Homo sapiens 2 (cdigo PDB 3H9E), Trypanosoma cruzi (cdigo PDB 4LSM ), Arabidopsis thaliana |