We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TAS | 2022 | 0 |
| 7TA9 | 2022 | 0 |
| 7T93 | 2022 | 0 |
| 7T7J | 2022 | 0 |
| 2MZY | 2015 | 0 |
| 3R9Q | 2011 | 0 |
| 3QYR | 2011 | 0 |
| 2MYY | 2015 | 0 |
| 7SSQ | 2023 | 0 |
| 3P2Y | 2010 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3kw3 | - | https://www.biorxiv.org/content/early/2018/06/13/346130.abstract | Computational evidence of a new allosteric communication pathway between active sites and putative regulatory sites in the alanine racemase of Mycobacterium | 2018 | J Jyothikumar, S Chandani, R Tangirala- bioRxiv, 2018 - biorxiv.org | Fig 3 Structure -based multiple sequence alignment of alanine racemases E. coli ( PDB code: 2RJG), S. pneumoniae ( PDB code: 3S46), P. fluorescens ( PDB code: 2ODO), P. aeruginosa ( PDB code: 1RCQ), A. baumannii ( PDB code: 4QHR), B. henselae ( PDB code: 3KW3 ) |
| 2 | 3cez | - | http://mss3.libraries.rutgers.edu/dlr/showfed.php?pid=rutgers-lib:35960 | Order and disorder in proteins | 2011 | A Ertekin - 2011 - mss3.libraries.rutgers.edu | ... 83 Figure 4.8 The superimposition of 2.6 ? X-ray crystal structure (PDB ID: 3E0O) and sparse-constraint NMR structures for MsrB from B. subtilis. ... NOESY: Nuclear Overhauser Effect Spectroscopy PDB: Protein data bank PSI: Protein Structure Initiative ... |
| 3 | 3gka | - | http://www.teses.usp.br/teses/disponiveis/76/76132/tde-24032014-151614/en.php | Estudo estrutural das enzimas Topoisomerase II Mitocondrial e Old Yellow Enzyme de Trypanosoma cruzi | 2014 | NC Rodrigues - teses.usp.br | ... resolution of 1.27 and 2.00 , respectively. The atomic coordinates and structure factors of the TcOYE structure in P212121 and P21 crystalline forms have been deposited in the Protein DataBank with the accession codes 4E2B and 4E2D, respectively. TcOYE displays a ... |
| 4 | 4g5d | - | https://www.degruyter.com/document/doi/10.1515/chem-2024-0005/html | Anti-parasitic activity and computational studies on a novel labdane diterpene from the roots of Vachellia nilotica | 2024 | NF Al-Tannak, JV Anyam, EY Santali, AI Gray- Open, 2024 - degruyter.com | structure with proteins was retrieved from a protein data bank ( PDB ) with codes: 2P7U and 4G5D agents and a structural basis for drug design) ( structures of prostaglandin F synthase |
| 5 | 4h51 | - | http://cz.oxfordjournals.org/content/early/2016/05/03/cz.zow044.abstract | Mitochondrial selfish elements and the evolution of biological novelties | 2016 | L Milani, F Ghiselli, M Passamonti - Current Zoology, 2016 - cz.oxfordjournals.org | ... and to better show the structure of both male and female acinus (ie, the structural unit of ... The tertiarystructure of RPHM21 and RPHF22 was predicted using I-TASSER (http://zhanglab.ccmb.med ...The best model in pdb format was used as input for the Chimera 1.8.1 software ... |
| 6 | 3dah | - | http://escholarship.org/uc/item/29g595sg.pdf | Modeling of Protein Flexibility and Inter-Molecular Interactions: Applications to Computer-Aided Drug Design and Discovery | 2012 | R Ai - 2012 - escholarship.org | ... Page 22. xxi Figure 5.1 .95 Summary of ligand binding capacity and subdomains of HSA using PDB structure 1E7E. Long-chain fatty acids are depicted in VDW representation using VMD 1.8.7. ... |
| 7 | 6u94 | - | https://www.biorxiv.org/content/10.1101/2021.08.17.456619.abstract | Genome sequencing of 196 Treponema pallidum strains from six continents reveals additional variability in vaccine candidate genes and dominance of Nichols clade | 2021 | NAP Lieberman, MJ Lin, H Xie, L Shretha, T Nguyen- bioRxiv, 2021 - biorxiv.org | guided by the top 1-7 templates for each target. We used the following templates in modelling each target: TP0136 used 4a2l and 5oj5; TP0326 used 4k3b and 5d0o; TP0548 used 6h3i; TP0966 used 1yc9, 3d5k, 4k7r, 4mt0, 4mt4, 5azs, and 6u94; TP0967 used 1yc9, 3d5k, 5azp, 5azs, and 6u94. |
| 8 | 3p96 | 3km3, 3k9g | http://www.nature.com/articles/nmeth.3212 | Macromolecular X-ray structure determination using weak, single-wavelength anomalous data | 2014 | G Bunkóczi, AJ McCoy, N Echols… - Nature …, 2014 - nature.com | ... phasing, accounting for 73% of such structures deposited in the Protein Data Bank (PDB;http://www.pdb.org/) 1 in 2013. In the SAD method, the X-ray diffraction from anomalouslyscattering atoms in a molecule provides X-ray phase information for the entire crystal structure ... |
| 9 | 5ihp | - | http://etheses.bham.ac.uk/id/eprint/8469/ | Structural studies of the DNA partitioning protein IncC from the plasmid RK2 | 2018 | MFU Rehman - 2018 - etheses.bham.ac.uk | Page 1. Structural Studies of the DNA Partitioning Protein IncC from the Plasmid RK2 By 251 6.15.2 Crosslink- structure mapping using IncC2 models 23 1.16 Structures of DNA/centromere binding proteins (CBP) 25 1.17 C- and N- terminals of KorB protein |
| 10 | 6omz | - | https://www.teses.usp.br/teses/disponiveis/76/76132/tde-08052020-092357/en.php | Estudos estruturais e descoberta de ligantes da enzima diidropteroato sintase de Xanthomonas albilineans para o combate da escaldadura das folhas | 2019 | AA Oliveira - teses.usp.br | product) and v. Screening, identification, validation and structural detailing of complexed receptor target structure (SBDD) and the fragment (FBDD) to be applied for tularensis ( PDB 3MCM), Coxiella burnetii ( PDB 3TR9), Mycobacterium smegmathis ( PDB 6OMZ ), Vibrio fischer |