We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 2KOK | 2009 | 9 |
| 3GLQ | 2009 | 9 |
| 2KWL | 2010 | 9 |
| 3MQD | 2010 | 9 |
| 3KC6 | 2010 | 9 |
| 3PME | 2010 | 9 |
| 4PCA | 2014 | 9 |
| 4XGI | 2015 | 9 |
| 3O0H | 2010 | 9 |
| 3MMT | 2010 | 9 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3men | - | http://www.ingentaconnect.com/content/ben/cpd/2013/00000019/00000004/art00003 | Modulation of epigenetic targets for anticancer therapy: clinicopathological relevance, structural data and drug discovery perspectives | 2013 | F Andreoli, A Jorge Moura Barbosa - Current , 2013 - ingentaconnect.com | ... Current Pharmaceutical Design, 2013, Vol. 19, No. 4 583 Table 1. Available 3D Structure ofHuman and Bacterial HDACs Class Name Organism PDB ID Ligand Domain Reference ... [262]Bacterial APAH Burkholderia pseudomallei 3MEN Catalytic Domain [263] a PDB ligand ID ... |
| 2 | 5udf | - | https://www.sciencedirect.com/science/article/pii/S0959440X17301586 | Translocation of lipoproteins to the surface of gram negative bacteria | 2018 | Y Hooda, TF Moraes- Current opinion in structural biology, 2018 - Elsevier | The model of LolCDE was obtained from the structure of LptBFG ( PDB ID: 5UDF )and is The structure of type IVa pilus machinery from Myxococcus xanthus ( PDB ID: 3JC9) was used as In contrast, Slam possesses a unique domain architecture and no structure of any protein of |
| 3 | 5vwm | - | https://pubs.acs.org/doi/abs/10.1021/acs.jmedchem.9b01604 | Discovery of Novel Inhibitors of LpxC Displaying Potent in Vitro Activity against Gram-Negative Bacteria | 2019 | JP Surivet, P Panchaud, JL Specklin- Journal of Medicinal, 2019 - ACS Publications | UDP-3-O-((R)-3-hydroxymyristoyl)-N-glucosamine deacetylase (LpxC) is as an attractive target for the discovery and development of novel antibacterial drugs to address the critical medical need crea... |
| 4 | 7m53 | - | https://www.cell.com/immunity/pdf/S1074-7613(23)00079-1.pdf | Broadly neutralizing anti-S2 antibodies protect against all three human betacoronaviruses that cause deadly disease | 2023 | P Zhou, G Song, H Liu, M Yuan, W He, N Beutler, X Zhu- Immunity, 2023 - cell.com | Glycan molecules (sticks, white) were modeled (based on structure in PDB : structures . Key epitope residues are buried in the stem-helix bundle (green) in prefusion spike... Figure S7. Structural comparison of antibodies targeting the coronavirus spike S2 stem helix. ... CV3-25 (7NAB), B6 (7M53), and IgG22 (7S3N). S |
| 5 | 6vyb | - | https://pdfs.semanticscholar.org/7a8c/b4cb523ba6ce60d7e87c02e8558c13363b41.pdf | Comparative docking studies on curcumin with COVID-19 proteins | 2020 | R Suravajhala, A Parashar, B Malik, VA Nagaraj - 2020 - pdfs.semanticscholar.org | were subjected to a 3D structure generation on CORINA [12] using their SMILE Preparation of proteins and grid parameters: The protein data bank ( PDB ) structures of different proteins were retrieved from RCSB membrane protein (6M17), polymerase (6M71), spike ( 6VYB ) |
| 6 | 6xmy | - | https://www.nature.com/articles/s41467-023-40928-0 | Protein engineering and iterative multimodule optimization for vitamin B6 production in Escherichia coli | 2023 | L Liu, J Li, Y Gai, Z Tian, Y Wang, T Wang, P Liu- Nature, 2023 - nature.com | docked into the binding pocket according to the crystal structure PDB 1PS6 and PDB 6XMY The crystal structure of PdxJ ( PDB 1M5W) showed that the octameric enzyme possesses |
| 7 | 3uf8 | - | https://www.mdpi.com/2076-3417/9/24/5389 | Carotenoids Overproduction in Dunaliella Sp.: Transcriptional Changes and New Insights through Lycopene Cyclase Regulation | 2019 | F Elleuch, HB Hlima, M Barkallah, P Baril, S Abdelkafi- Applied Sciences, 2019 - mdpi.com | and cytochrome b 6 /f complex and maintains the integrity of cell architecture [7]. It attempted to understand how this stress could affect LCYB molecule by generating its 3D structure to 200 bp, chosen temperature (Tm) around 60 C, and avoiding secondary structures and self |
| 8 | 8slg | - | https://www.nature.com/articles/s41467-024-48837-6 | Structure prediction of protein-ligand complexes from sequence information with Umol | 2024 | P Bryant, A Kelkar, A Guljas, C Clementi- Nature, 2024 - nature.com | We parsed all protein sequences from the PDB files. 18884 out of 19119 protein structures (99%) could be parsed (<80% missing CAs and >50 residues). Only the first protein chain in |
| 9 | 4xwi | - | https://www.tandfonline.com/doi/abs/10.1080/07391102.2018.1459318 | Towards novel inhibitors against KdsB: A highly specific and selective broad-spectrum bacterial enzyme | 2018 | S Ahmad, S Raza, A Abro, KR Liedl- Biomolecular Structure, 2018 - Taylor & Francis | from Protein Data Bank ( PDB ) with PDB ID, 4FCU (Berman et al., 2006). The protein is present (A. baumannii), 3K8D (E.coli), 4XWI (P. aeruginosa), 3TQD (C. Burnetii), 3QAM (V explicates enzyme structure stability and strong binding affinity of the compound towards the |
| 10 | 3qh4 | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/ddr.21468 | Microbial esterases and ester prodrugs: An unlikely marriage for combating antibiotic resistance | 2018 | EM Larsen, RJ Johnson- Drug development research, 2018 - Wiley Online Library | Bacterial esterase structure and function The bacterial esterase, LipW from M. tuberculosis ( PDB ID: 3QH4 ) is shown as an example with its sheets in tan, its helices in purple, and its catalytic triad in sticks and labeled |