We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3V2I | 2012 | 8 |
| 6N38 | 2018 | 8 |
| 3KRB | 2009 | 8 |
| 6MG6 | 2018 | 8 |
| 3R4T | 2011 | 8 |
| 3OBK | 2010 | 8 |
| 3RIH | 2011 | 8 |
| 3GTD | 2009 | 8 |
| 4DHE | 2012 | 8 |
| 3TMG | 2011 | 8 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6q09 | - | https://www.sciencedirect.com/science/article/pii/S0003986121001673 | Diversity of structures and functions of oxo-bridged non-heme diiron proteins | 2021 | MLC Nogueira, AJ Pastore, VL Davidson- Archives of Biochemistry and, 2021 - Elsevier | Archives of Biochemistry and Biophysics. Diversity of structures and functions of oxo-bridged non-heme diiron proteins. ... Fig. 3. Examples of the different combinations of amino acid residues that coordinate the irons in hemerythrin-like proteins. A. HLP from Mycobacterium kansasii with 4H/2E/1Y coordination (PDB entry 6Q09) |
| 2 | 3k2h | - | http://pubs.acs.org/doi/abs/10.1021/ci300196g | Structural insights into the molecular basis of the ligand promiscuity | 2012 | N Sturm, J D?saphy, RJ Quinn, D Rognan? - Journal of Chemical Information and Modeling, 2012 - ACS Publications | ... To this purpose, we exploited the information in the Protein Data Bank (PDB)19 to identify ligands involved in complexes with different proteins. ... MATERIALS AND METHODS Identification in the sc-PDB of promiscuous ligands and their targets ... |
| 3 | 4iuj | - | http://onlinelibrary.wiley.com/doi/10.1002/med.21401/full | The influenza virus polymerase complex: an update on its structure, functions, and significance for antiviral drug design | 2016 | A Stevaert, L Naesens - Medicinal Research Reviews, 2016 - Wiley Online Library | ... Closeup showing a superposition of the crystal structures of the PAC-PB1N interface[223] (PDB: 3CM8) on that of the FluA polymerase (light gray) and the apo form of PAC[224] (light blue; PDB: 4IUJ). ... |
| 4 | 3uam | - | https://febs.onlinelibrary.wiley.com/doi/abs/10.1111/febs.15203 | Characterization of a bacterial copperdependent lytic polysaccharide monooxygenase with an unusual second coordination sphere | 2020 | A Munzone, B El Kerdi, M Fanuel- The FEBS, 2020 - Wiley Online Library | by a glycine instead [23,24,26]. Additionally, a crystal structure of a putative AA10 LPMO from Burkholderia pseudomallei with a methionine in place of the alanine was released in the Protein Data Bank ( PDB accession code 3UAM ) |
| 5 | 3moy | - | http://onlinelibrary.wiley.com/doi/10.1002/jcc.21900/full | Fast and accurate computation schemes for evaluating vibrational entropy of proteins | 2011 | B Xu, H Shen, X Zhu, G Li - Journal of computational chemistry, 2011 - Wiley Online Library | ... PDB id, Protein length, Standard NMA (kcal mol ?1 K ?1 ), Scaled BNM (kcal mol ?1 K ?1 ), Scaled GNM (kcal mol ?1 K ?1 ), Scaled ANM (kcal mol ?1 K ?1 ). 1al3, 324, 8.462, 8.405, 8.466, 8.818. ... 3m73, 314, 10.930, 10.912, 11.027, 10.248. 3moy, 263, 9.020, 9.108, 9.183, 9.171. ... |
| 6 | 4tu1 | 3sth | http://www.sciencedirect.com/science/article/pii/S1047847715000544 | The apicomplexan glideosome and adhesins–Structures and function | 2015 | LE Boucher, J Bosch - Journal of structural biology, 2015 - Elsevier | The apicomplexan family of pathogens, which includes Plasmodium spp. and Toxoplasma gondii,are primarily obligate intracellular parasites and invade multiple c. |
| 7 | 6vxx | 6vyb | https://www.ncbi.nlm.nih.gov/pmc/articles/pmc7337389/ | Glycans on the SARS-CoV-2 spike control the receptor binding domain conformation | 2020 | R Henderson, RJ Edwards, K Mansouri, K Janowska- bioRxiv, 2020 - ncbi.nlm.nih.gov | this map yielding a structure aligning to the unmutated 2P structure ( PDB ID 6VXX ) with a one RBD 'up' state structure fit to this map to its unmutated counterpart ( PDB ID 6VYB N234A mutation (Figure 3E and andF).F). However, the limited resolution of this structure limits close |
| 8 | 3fdz | - | http://www.nature.com/ncomms/journal/v4/n4/abs/ncomms2759.html | Tyr26 phosphorylation of PGAM1 provides a metabolic advantage to tumours by stabilizing the active conformation | 2013 | T Hitosugi, L Zhou, J Fan, S Elf, L Zhang, J Xie? - Nature Communications, 2013 - nature.com | ... (a) Cartoon representation of 2,3-BPG location from structure 3FDZ superposed on PGAM1 (PDB accession code: 1YFK). H11 and Y92 are directly proximal to and Y26 is also close to cofactor (2,3-BPG)/substrate (3-PG) binding site. ... |
| 9 | 3laa | - | http://scitation.aip.org/content/aip/journal/jcp/139/19/10.1063/1.4830404 | Multiscale multiphysics and multidomain models—Flexibility and rigidity | 2013 | K Xia, K Opron, GW Wei - The Journal of chemical physics, 2013 - scitation.aip.org | ... The conventional dogma of sequence-structure-function2 has been seriously challenged by the ...Structures 1DF4 and 2Y7L (top) represent the high scoring structures, those with scores near 0.9. Structures 2Y7L and 3LAA (bottom) show the typical pattern for correlation scores based on parameter values for the majority of proteins. ... |
| 10 | 3uqb | - | http://onlinelibrary.wiley.com/doi/10.1002/pro.2356/full | To fuse or not to fuse: What is your purpose? | 2013 | MR Bell, MJ Engleka, A Malik, JE Strickler - Protein Science, 2013 - Wiley Online Library | ... The protein was crystallized and the structure determined to 1.9Å resolution with SUMO stillattached (labeled). (PDB ID 3UQB, Fox III, Abendroth, Staker, and Stewart, Seattle StructuralGenomics Center for Infectious Disease, deposited Nov. 2011). ... |