We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4FFC | 2012 | 8 |
| 3R9R | 2011 | 8 |
| 2N6W | 2016 | 8 |
| 3OIB | 2010 | 8 |
| 3URR | 2011 | 8 |
| 3EOL | 2008 | 8 |
| 3HWK | 2009 | 8 |
| 3SWT | 2011 | 8 |
| 4KYX | 2013 | 8 |
| 3K9W | 2009 | 8 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5td3 | 5vxt, 5umh | https://www.frontiersin.org/articles/10.3389/fmicb.2020.01100/full | Characterization of a Novel Functional Trimeric Catechol 1, 2-Dioxygenase From a Pseudomonas stutzeri Isolated From the Gulf of Mexico | 2020 | J Rodrguez-Salazar, AG Almeida-Juarez- Frontiers in, 2020 - frontiersin.org | substrates in its catalytic site (Vetting and Ohlendorf, 2000; Earhart et al., 2005; Micalella et al., 2011, PDB entries: 2XSR 5UMH, 5TD3 , and 5VXT) model of PSC12DO was elaborated using the CPHmodels 3.2 Server based on the C12DO P. arvilla structure (PDBid: 2AZQ ... Burkholderia vietnamiensis, 48% (PDBid:5TD3); and Burkholderia ambifaria, 43% (PDBid:5VXT). The most variable regions are located in residues 1–29 |
| 2 | 4h4g | - | https://www.sciencedirect.com/science/article/pii/S1096717617303658 | Combination of type II fatty acid biosynthesis enzymes and thiolases supports a functional -oxidation reversal | 2018 | JM Clomburg, SC Contreras, A Chou, JB Siegel- Metabolic, 2018 - Elsevier | The PDB codes for the 10 matches with the lowest E-values are 4H4G , 1U1Z, 4I83, 2OKH, 1ZHG, 3D6X, 2GLL, 3B7J, 1Z6B, and For ACP, the structure coordinated from an established structure of ACP bound to the homologous protein FabA was used ( PDB code: 4KEH) |
| 3 | 7jx3 | 7k45 | https://www.nature.com/articles/s41392-022-00910-6 | Parallel profiling of antigenicity alteration and immune escape of SARS-CoV-2 Omicron and other variants | 2022 | C Sun, YF Kang, YT Liu, XW Kong, HQ Xu- Signal transduction and, 2022 - nature.com | All the structural representations were rendered using ChimeraX-1.1.1 or PyMOL. The complex structures used in this study are available at PDB (Accession number: 7KZB, 7K45, 7JX3 , |
| 4 | 7ly0 | - | https://www.nature.com/articles/s41564-022-01092-1 | Differential neutralizing antibody responses elicited by CoronaVac and BNT162b2 against SARS-CoV-2 Lambda in Chile | 2022 | ML Acevedo, A Gaete-Argel, L Alonso-Palomares- Nature, 2022 - nature.com | determined crystal structures ( PDB : 7BNN, PDB : 7BWJ, PDB : 7LY0 ). Structural alignments c) Same as a) for antibody S2M28 solved by CryoEM (PDBid: 7LY0 ), which recognizes the |
| 5 | 3l56 | - | http://vir.sgmjournals.org/content/92/7/1650.short | Influence of PB2 host-range determinants on the intranuclear mobility of the influenza A virus polymerase | 2011 | A Foeglein, EM Loucaides, M Mura? - Journal of General Virology, 2011 - Soc General Microbiol | ... The side chains of residues G590 and Q591 are yellow. (c) Surface electrostatic potential modelling (using Swiss-Prot: red indicates negative charge, blue positive charge) on the 627 domain of PR8 or tPB2 (adapted from PDB 3L56; Yamada et al., 2010). ... |
| 6 | 5eks | - | https://journals.asm.org/doi/abs/10.1128/jb.00248-20 | Structural and biochemical analyses reveal that chlorogenic acid inhibits the shikimate pathway | 2020 | N Neetu, M Katiki, A Dev, S Gaur, S Tomar- Journal of, 2020 - Am Soc Microbiol | replacement method using the coordinates of chain A of DHQS enzyme from Vibrio cholerae ( PDB identifier [ID]: 3OKF Structural comparison of PaDHQS structure with its homologs closer to its homologs from A. nidulans (1SG6), V. cholerae (3OKF), A. baumannii ( 5EKS ), and H |
| 7 | 3p96 | - | https://www.mdpi.com/1424-8247/12/2/66 | Targeting the Serine Pathway: A Promising Approach against Tuberculosis? | 2019 | M Haufroid, J Wouters- Pharmaceuticals, 2019 - mdpi.com | Structural differences can occur from one specie to another, ie, human phosphoserine phosphatase is only composed of the PSP domain while of the pathway in order to inhibit the reaction in an allosteric manner (Figure 7b).... Structure of M. avium (3P96) with domain ACT-I in orange, ACT-II in blue, the linker between two ACT domains in red, PSP catalytic domain in grey, linker between PSP domain and ACT-II in green (b). ... |
| 8 | 2lwk | - | https://link.springer.com/chapter/10.1007/7355_2016_20 | Viral RNA targets and their small molecule ligands | 2017 | T Hermann- RNA Therapeutics, 2017 - Springer | disrupt or stabilize the RNA hairpin and thereby affect the equilibrium between translation of structural and enzymatically The three-dimensional structure of the FFS RNA in complex with a synthetic compound has been The added tetraloop is indicated in grey ( PDB : 2LWK ) [34] |
| 9 | 6mb1 | - | https://elifesciences.org/articles/57861 | Profiling of myristoylation in Toxoplasma gondii reveals an N-myristoylated protein important for host cell penetration | 2020 | M Broncel, C Dominicus, L Vigetti, SD Nofal, EJ Bartlett- Elife, 2020 - elifesciences.org | structure with bound IMP-1002 ( PDB : 6MB1 , [Schlott et al., 2019]) revealed high sequence identity (57%) and showed that all residues directly involved in compound binding are conserved within the TgNMT active site and therefore predicted to adopt an identical structural |
| 10 | 6tys | 7ki6, 7ki4 | https://www.nature.com/articles/s41467-023-39278-8 | Structure and antigenicity of divergent Henipavirus fusion glycoproteins | 2023 | A Isaacs, YS Low, KL Macauslane, J Seitanidou- Nature, 2023 - nature.com | -EM structures from this work also display clear fusion peptide loop densities, which were only previously seen in structures determined by X-ray crystallography for NiV F ( PDB 5EVM & |