We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5K85 | 2016 | 8 |
| 4KYX | 2013 | 8 |
| 3EIY | 2008 | 8 |
| 3JS4 | 2009 | 8 |
| 3SWT | 2011 | 8 |
| 3KRB | 2009 | 8 |
| 3GTD | 2009 | 8 |
| 4XGI | 2015 | 8 |
| 4LFY | 2013 | 8 |
| 3R2V | 2011 | 8 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6mb1 | - | https://elifesciences.org/articles/57861 | Profiling of myristoylation in Toxoplasma gondii reveals an N-myristoylated protein important for host cell penetration | 2020 | M Broncel, C Dominicus, L Vigetti, SD Nofal, EJ Bartlett- Elife, 2020 - elifesciences.org | structure with bound IMP-1002 ( PDB : 6MB1 , [Schlott et al., 2019]) revealed high sequence identity (57%) and showed that all residues directly involved in compound binding are conserved within the TgNMT active site and therefore predicted to adopt an identical structural |
| 2 | 3cez | 3cxk | http://www.sciencedirect.com/science/article/pii/S002228360901095X | Methionine sulfoxide reductase B displays a high level of flexibility | 2009 | FM Ranaivoson, F Neiers, B Kauffmann? - Journal of molecular Biology, 2009 - Elsevier | ... View thumbnail images View high quality image (983K). Two X-ray structures of MsrB from Neisseria gonorrhoeae [Protein Data Bank (PDB) ID 1L1D 12 ] and Burkhodelia pseudomallei (PDB IDs 3CXK and 3CEZ; unpublished results) have been determined so far. ... |
| 3 | 5upg | - | https://pubs.acs.org/doi/abs/10.1021/acs.jmedchem.0c01215 | Fragment-Based Discovery of Novel Non-Hydroxamate LpxC Inhibitors with Antibacterial Activity | 2020 | Y Yamada, H Takashima, DL Walmsley- Journal of Medicinal, 2020 - ACS Publications | UDP-3-O-acyl-N-acetylglucosamine deacetylase (LpxC) is a zinc metalloenzyme that catalyzes the first committed step in the biosynthesis of Lipid A, an essential component of the cell envelope of Gr... Figure 3. Detail of the crystal structure (PDB code: 5UPG) of 1 (PF-5081090) binding to the active site of PaLpxC |
| 4 | 4whx | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/prot.25477 | The transaminase engineering database (oTAED): a navigation tool in protein sequence and structure space | 2018 | O Bu, PCF Buchholz, M Grff- Proteins: Structure, 2018 - Wiley Online Library | entry 4WHX ) and an amino lyase with activity towards 4-amino-4-deoxychorismate ( PDB entry 2Y4R) [68] as the -TA from Arthrobacter sp. ( PDB entries 5FR9 and 3WWH) which was adapted by John Wiley & Sons, Inc. PROTEINS: Structure , Function, and Bioinformatics |
| 5 | 6q09 | - | https://www.sciencedirect.com/science/article/pii/S0003986121001673 | Diversity of structures and functions of oxo-bridged non-heme diiron proteins | 2021 | MLC Nogueira, AJ Pastore, VL Davidson- Archives of Biochemistry and, 2021 - Elsevier | Archives of Biochemistry and Biophysics. Diversity of structures and functions of oxo-bridged non-heme diiron proteins. ... Fig. 3. Examples of the different combinations of amino acid residues that coordinate the irons in hemerythrin-like proteins. A. HLP from Mycobacterium kansasii with 4H/2E/1Y coordination (PDB entry 6Q09) |
| 6 | 4xxp | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5425277/ | Placeholder factors in ribosome biogenesis: please, pave my way | 2017 | FJ Espinar-Marchena, R Babiano, J Cruz - Microbial Cell, 2017 - ncbi.nlm.nih.gov | ... As expected from this structural similarity, cryo-EM and CRAC analyses confirmed that Tsr1 binds,albeit differently than ... MDM2 fragment was taken from 4XXP 164 after superimposing the structure shown in this file with that of L11 shown in A. ... |
| 7 | 4mow | - | https://microbialcellfactories.biomedcentral.com/articles/10.1186/s12934-016-059... | Anaerobic poly-3-D-hydroxybutyrate production from xylose in recombinant Saccharomyces cerevisiae using a NADH-dependent acetoacetyl-CoA reductase | 2016 | AM de las Heras - Microbial Cell , 2016 - microbialcellfactories.biomedcentral. | ... Since the crystal structures of these AARs were not available, protein structures were made ... protein sequence identity to the C. necator AAR whose crystal structure was used ... Both S. wolfei homology models (Swol_0651 modelled on PDB: 4MOW [27] and Swol_1910 modelled ... |
| 8 | 5i4m | - | https://www.sciencedirect.com/science/article/pii/S0304389421000765 | Zn2+-dependent enhancement of Atrazine biodegradation by Klebsiella variicola FH-1 | 2021 | J Zhang, X Wu, X Zhang, H Pan, JES Shearer- Journal of Hazardous, 2021 - Elsevier | chloromuconate to generate maleylacetate (Cmara et al., 2008). As a major structural component in the cell wall, peptidoglycan plays important roles in cell growth. Studies have shown that three zinc-dependent endopeptidases |
| 9 | 3obk | - | http://www.sciencedirect.com/science/article/pii/S000398611100347X | Allostery and the dynamic oligomerization of porphobilinogen synthase | 2012 | EK Jaffe, SH Lawrence - Archives of biochemistry and biophysics, 2011 - Elsevier | ... B) Subunits B, A and E (corresponding to subunits A,B and F of the oligomers illustrated in part A) of T. gondii PBGS (pdb: 3OBK) are shown as dark teal, gray and light teal cartoons with the remaining subunits of the 8mer shown as transparent white spheres. ... |
| 10 | 4iuj | - | http://onlinelibrary.wiley.com/doi/10.1002/med.21401/full | The influenza virus polymerase complex: an update on its structure, functions, and significance for antiviral drug design | 2016 | A Stevaert, L Naesens - Medicinal Research Reviews, 2016 - Wiley Online Library | ... Closeup showing a superposition of the crystal structures of the PAC-PB1N interface[223] (PDB: 3CM8) on that of the FluA polymerase (light gray) and the apo form of PAC[224] (light blue; PDB: 4IUJ). ... |