We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5VWM | 2017 | 8 |
| 4OL9 | 2014 | 8 |
| 3TMG | 2011 | 8 |
| 3K9W | 2009 | 8 |
| 4KYX | 2013 | 8 |
| 3SWT | 2011 | 8 |
| 6Q09 | 2020 | 8 |
| 3URR | 2011 | 8 |
| 4EGE | 2012 | 8 |
| 3RIH | 2011 | 8 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6c87 | 6byq | https://scripts.iucr.org/cgi-bin/paper?rr5159 | SIMBAD: a sequence-independent molecular-replacement pipeline | 2018 | AJ Simpkin, F Simkovic, JMH Thomas- Section D: Structural, 2018 - scripts.iucr.org | researchers involved. All cases involve the crystallization of a known contaminant. Examples involving the use of SIMBAD for novel structure solution are available elsewhere, such as PDB entries 6byq, 6c87 and 5wol. Cases illustrating |
| 2 | 6n41 | - | https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0234869 | Whole-genome sequencing reveals origin and evolution of influenza A (H1N1) pdm09 viruses in Lincang, China, from 2014 to 2018 | 2020 | XN Zhao, HJ Zhang, D Li, JN Zhou, YY Chen, YH Sun- PloS one, 2020 - journals.plos.org | We searched and obtained the model template ( PDB ID: 6n41 .1.A) of HA protein of A/California/07/2009. We conducted a structure prediction of the trimeric HA protein by SWISS-MODEL, then the changes at the epitopes and RBSs were visualized in PyMol |
| 3 | 5udf | - | https://www.pnas.org/content/115/31/E7389.short | Insights into bacterial lipoprotein trafficking from a structure of LolA bound to the LolC periplasmic domain | 2018 | E Kaplan, NP Greene, A Crow- Proceedings of the, 2018 - National Acad Sciences | Fig. 4. Structural and bioinformatic evidence that the Hook is conserved among LolC, LolE, and LolF but absent from the wider type VII ABC transporter superfamily. Comparison of the periplasmic domains of A. actinomycetemcomitans MacB (5LIL), Mycobacterium tuberculosis FtsX (4N8N), E. coli LolC (5NAA), and A. baumannii LolF (5UDF, annotated as LolE in the PDB). |
| 4 | 5i4m | - | https://www.sciencedirect.com/science/article/pii/S0304389421000765 | Zn2+-dependent enhancement of Atrazine biodegradation by Klebsiella variicola FH-1 | 2021 | J Zhang, X Wu, X Zhang, H Pan, JES Shearer- Journal of Hazardous, 2021 - Elsevier | chloromuconate to generate maleylacetate (Cmara et al., 2008). As a major structural component in the cell wall, peptidoglycan plays important roles in cell growth. Studies have shown that three zinc-dependent endopeptidases |
| 5 | 3cez | 3cxk | http://www.sciencedirect.com/science/article/pii/S002228360901095X | Methionine sulfoxide reductase B displays a high level of flexibility | 2009 | FM Ranaivoson, F Neiers, B Kauffmann? - Journal of molecular Biology, 2009 - Elsevier | ... View thumbnail images View high quality image (983K). Two X-ray structures of MsrB from Neisseria gonorrhoeae [Protein Data Bank (PDB) ID 1L1D 12 ] and Burkhodelia pseudomallei (PDB IDs 3CXK and 3CEZ; unpublished results) have been determined so far. ... |
| 6 | 5vm8 | - | https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007904 | Restriction of S-adenosylmethionine conformational freedom by knotted protein binding sites | 2020 | AP Perlinska, A Stasiulewicz- PLOS Computational, 2020 - journals.plos.org | depicted with rainbow coloring (TrmD, PDB ID: 4yvg), (B) unknotted methyltransferase (Trm5, PDB ID: 2zzm On the top of this it was shown that the structure of the knotted core Different conformations of the ligand imply differences in both structural and chemical characteristics of |
| 7 | 3meq | - | https://pubs.acs.org/doi/abs/10.1021/jacs.7b12369 | Activity-related microsecond dynamics revealed by temperature-jump Forster resonance energy transfer measurements on thermophilic alcohol dehydrogenase | 2018 | MB Vaughn, J Zhang, TG Spiro, RB Dyer- Journal of the, 2018 - ACS Publications | Previous studies of a thermophilic alcohol dehydrogenase (ht-ADH) demonstrated a range of discontinuous transitions at 30 C that include catalysis, kinetic isotope effects, protein hydrogendeuter... Figure 1. Structure of ht-ADH in green with NADH and alcohol in cyan. The three tryptophan residues are yellow. This structure was created from an overlap of PDB: 1RJW and 3MEQ |
| 8 | 4whx | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/prot.25477 | The transaminase engineering database (oTAED): a navigation tool in protein sequence and structure space | 2018 | O Bu, PCF Buchholz, M Grff- Proteins: Structure, 2018 - Wiley Online Library | entry 4WHX ) and an amino lyase with activity towards 4-amino-4-deoxychorismate ( PDB entry 2Y4R) [68] as the -TA from Arthrobacter sp. ( PDB entries 5FR9 and 3WWH) which was adapted by John Wiley & Sons, Inc. PROTEINS: Structure , Function, and Bioinformatics |
| 9 | 4ix8 | - | https://www.sciencedirect.com/science/article/pii/S0981942818304790 | Comprehensive genomic analysis of the TYROSINE AMINOTRANSFERASE (TAT) genes in apple (Malus domestica) allows the identification of MdTAT2 conferring | 2018 | H Wang, Q Dong, D Duan, S Zhao, M Li- Plant Physiology and, 2018 - Elsevier | sequence identity for residues 44423), whereas MdTAT3 structure most closely matched that of Leishmania infantum TAT ( PDB ID: 4IX8 .A; RMSD To better understand the gene structure diversity of apple TAT proteins, the intron-exon organization in the coding sequences of |
| 10 | 5elo | - | https://www.nature.com/articles/s41467-022-33736-5 | Lysyl-tRNA synthetase, a target for urgently needed M. tuberculosis drugs | 2022 | SR Green, SH Davis, S Damerow, CA Engelhart- Nature, 2022 - nature.com | structure of M. tuberculosis LysRS was solved through molecular replacement using the structure of Cryptosporidium parvum LysRS ( PDB : 5elo ) 22 and the structure was refined using |