We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3NF4 | 2010 | 6 |
| 3QDF | 2011 | 6 |
| 3OQ8 | 2010 | 6 |
| 4RGB | 2014 | 6 |
| 4O5H | 2014 | 6 |
| 4QHQ | 2014 | 6 |
| 7KNA | 2021 | 6 |
| 4NI5 | 2013 | 6 |
| 4DZ6 | 2012 | 6 |
| 6D8W | 2018 | 6 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3hgb | - | http://www.sciencedirect.com/science/article/pii/S1097276515004529 | Identification of a Class of Protein ADP-Ribosylating Sirtuins in Microbial Pathogens | 2015 | JGM Rack, R Morra, E Barkauskaite, R Kraehenbuehl… - Molecular cell, 2015 - Elsevier | ... SpyGcvH-L structure is shown in black and canonical GcvH of cattle (PDB: 3KLR), pea (PDB: 1DMX), and M. tuberculosis (PDB: 3HGB) in orange, green, and yellow, respectively. Residue numbers for GcvH-L are given. ... |
| 2 | 4f47 | - | https://pubs.acs.org/doi/abs/10.1021/acsinfecdis.0c00329 | Post-translational Succinylation of Mycobacterium tuberculosis Enoyl-CoA Hydratase EchA19 Slows Catalytic Hydration of Cholesterol Catabolite 3-Oxo-chol-4,22 | 2020 | AC Bonds, T Yuan, JM Werman, J Jang- ACS Infectious, 2020 - ACS Publications | Cholesterol is a major carbon source for Mycobacterium tuberculosis (Mtb) during infection, and cholesterol utilization plays a significant role in persistence and virulence within host macrophages... |
| 3 | 6q06 | 3sia | https://www.mdpi.com/2076-393X/8/4/587 | Host Receptors of Influenza Viruses and CoronavirusesMolecular Mechanisms of Recognition | 2020 | N Sriwilaijaroen, Y Suzuki- Vaccines, 2020 - mdpi.com | A CoV structure with S and HE spikes and positions of S1-NTD and S1-CTD on the S IAVs from avians, either wild birds or domestic birds, typically prefer the 2, 3Sia terminal This representative viral HA is from pdb ID of 3ube, which showed a 2009 pandemic HA in complex... Side view of a surface diagram of a trimeric CoV S protein (pdb: 6q06 [148]) |
| 4 | 6q04 | - | https://www.sciencedirect.com/science/article/pii/S1047847721000186 | Spike protein fusion loop controls SARS-CoV-2 fusogenicity and infectivity | 2021 | D Pal- Journal of Structural Biology, 2021 - Elsevier | The structural and dynamics analyses of the Spike show that its fusion loop spatially organizes three fusion peptides contiguous to each other to synergistically I propose a Contact Initiation Model based on the architecture of the Spike quaternary structure that explains the |
| 5 | 3fdz | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5355328/ | Molecular dynamics simulation reveals how phosphorylation of tyrosine 26 of phosphoglycerate mutase 1 upregulates glycolysis and promotes tumor growth | 2017 | Y Wang, WS Cai, L Chen, G Wang - Oncotarget, 2017 - ncbi.nlm.nih.gov | ... We then used the crystal structure ( PDB ID: 3FDZ ) as the reference to study the structural deviations of S 0 wt and S 1 phos, because the crystal structure had recorded faithfully the actual binding of 2,3-BPG with PGAM1. ... |
| 6 | 3f9i | - | https://www.nature.com/articles/s41598-017-13978-w | Engineering a short-chain dehydrogenase/reductase for the stereoselective production of (2 S, 3 R, 4 S)-4-hydroxyisoleucine with three asymmetric centers | 2017 | X Shi, T Miyakawa, A Nakamura, F Hou, M Hibi- Scientific reports, 2017 - nature.com | The structure of HILDH-NADH was determined using the molecular replacement method performed by the program MOLREP on the CCP4 suite using the structure of 3-ketoacyl-(acyl-carrier-protein) reductase (PDB code, 3F9I; sequence identity, 34%) as the initial model. |
| 7 | 6ws6 | - | https://www.frontiersin.org/articles/10.3389/fimmu.2021.652223/full | CAR-NK Cells Effectively Target SARS-CoV-2-Spike-Expressing Cell Lines In Vitro | 2021 | MT Ma, S Badeti, CH Chen, J Kim- Frontiers in, 2021 - frontiersin.org | Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) is highly contagious and presents a significant public health issue. Current therapies used to treat coronavirus disease 2019 (COVID-19) include monoclonal antibody cocktail, convalescent plasma, antivirals ... Plasmid construct of S309-CAR. The SFG retroviral vector contains the S309 single chain antibody fragment (accession code 6WS6 on PDB) |
| 8 | 4ggq | - | https://www.sciencedirect.com/science/article/pii/S0959440X18300976 | Enzyme targets for drug design of new anti-virulence therapeutics | 2018 | CM Kahler, M Sarkar-Tyson, EA Kibble- opinion in structural, 2018 - Elsevier | Mip from Burkholderia pseudomallei as a complex with a pipecolic acid derivative (CJ40) ( PDB : 4GGQ ) d) Ribbon diagram of the structure of EptA ( PDB : 5FGN a detailed understanding of the mechanism of substrate binding and catalysis will enable a structure guided approach |
| 9 | 6c6b | - | https://www.sciencedirect.com/science/article/pii/S0141813020344470 | Structural characterization, antifungal and cytotoxic profiles of quaternized heteropolysaccharide from Anadenanthera colubrina | 2020 | FOS Ribeiro, GS de Arajo, MGA Mendes- International Journal of, 2020 - Elsevier | Volume 165, Part A, 15 December 2020, Pages 279-290. International Journal of Biological Macromolecules. Structural characterization, antifungal and cytotoxic profiles of quaternized heteropolysaccharide from Anadenanthera colubrina The 3D structures of all possible C. neoformans and M. canis targets were obtained from the Protein Data Bank (PDB) (Protein Data Bank, 2019) with the codes 2W3N (Carbonic anhydrase 2), 3Q73 (Farnesyl transferase), 5I33 (Adenylosuccinate synthetase), 5 U29 (Acetyl-coenzyme |
| 10 | 3oib | - | http://pubs.acs.org/doi/abs/10.1021/id500033m | Unraveling cholesterol catabolism in Mycobacterium tuberculosis: the ChsE4-ChsE5 α2β2 acyl-CoA dehydrogenase initiates β-oxidation of 3-oxo-cholest-4-en-26-oyl … | 2015 | M Yang, R Lu, KE Guja, MF Wipperman… - ACS Infectious …, 2015 - ACS Publications | ... he RMSD value between ChsE4 and 3OIB is 1.718 Å with 831 α-carbons aligned; the RMSD value between ChsE4 and 3MDE is 2.362 Å with 942 α-carbons ... |