We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3KJR | 2009 | 6 |
| 4OLF | 2015 | 6 |
| 7SOF | 2021 | 6 |
| 3QH8 | 2011 | 6 |
| 4KZ1 | 2014 | 6 |
| 4JF8 | 2014 | 6 |
| 4YK1 | 2016 | 6 |
| 4O2D | 2014 | 6 |
| 4FRY | 2012 | 6 |
| 7LY0 | 2021 | 6 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4ncx | 4olf, 4q15, 4wi1 | https://www.nature.com/articles/s41467-022-32630-4 | Elucidating the path to Plasmodium prolyl-tRNA synthetase inhibitors that overcome halofuginoneresistance | 2022 | MA Tye, NC Payne, C Johansson, K Singh- Nature, 2022 - nature.com | Encouraged by these results, we evaluated the reported co-crystal structure of compound 2 bound to HsProRS ( PDB : 5VAD) more closely and noted that the cyclohexyl substituent ... Ligands were docked against the ProRS structures reported here (PDB 6T7K, 7QB7, 7QC1, and 7QC2) and previously (for HsProRS, PDB: 5VAD, 4HVC, 4K86, 4K87, 4K88, and 5V58; for PfcProRS, PDB 4Q15, 4NCX, 4YDQ, 4OLF, 5IFU, and 4WI1). |
| 2 | 3hn6 | - | https://febs.onlinelibrary.wiley.com/doi/abs/10.1002/1873-3468.13289 | Functional and solution structure studies of amino sugar deacetylase and deaminase enzymes from Staphylococcusaureus | 2018 | JS Davies, D Coombes, CR Horne, FG Pearce- FEBS, 2018 - Wiley Online Library | burgdorferi ( PDB id: 3HN6 )). This is the first time a dimeric oligomeric state for a bacterial NagB has been reported Since there are no representative NagB dimers reported, we constructed two possible dimers of NagB from the E. coli hexamer ( PDB id oligomeric structure |
| 3 | 4ix8 | - | https://www.sciencedirect.com/science/article/pii/S0141813020341957 | Flavones reversibly inhibit Leishmania donovani tyrosine aminotransferase by binding to the catalytic pocket: An integrated in silico-in vitro approach | 2020 | S Sasidharan, P Saudagar- International Journal of Biological, 2020 - Elsevier | TAT has also been characterized in Leishmania major [26], Leishmania donovani [10], and Leishmania infantum [8]. Furthermore, the crystal structure of the TAT from L. infantum has been solved ( PDB id: 4IX8 ) [27] and the structure contained PLP in the active site cavity bound |
| 4 | 3gka | - | http://onlinelibrary.wiley.com/doi/10.1002/cctc.201100141/full | Stereopreferences of Old Yellow Enzymes: Structure correlations and sequence patterns in enoate reductases | 2011 | G Oberdorfer, G Steinkellner, C Stueckler? - ChemCatChem, 2011 - Wiley Online Library | ... Table 1. Protein structures used for comparison and cluster generation. Proteins, PDB accession code, Residues (Tyr/Phe/Ile) [a], Stereospecificity [b], Pseudo-atom distance [c] [?], Cluster. ... N-ethylmaleimide reductase, 3gka, Tyr?Tyr, R (ee=62 %)/S [e], 7.5, ... |
| 5 | 4wi1 | 4olf | https://www.sciencedirect.com/science/article/pii/S1319016418300240 | Inverse docking based screening and identification of protein targets for Cassiarin alkaloids against Plasmodium falciparum | 2018 | A Negi, N Bhandari, BRK Shyamlal- Saudi Pharmaceutical, 2018 - Elsevier | In order, to find the active site on those structure which does not contain co-crystallise ligand, active site finder tool was used to identify the active patches Protein, PDB , Res 4WI1 , 1.65, 1-(4-fluorophenyl)-3-[4-(4-fluorophenyl)-1-methyl-3-(trifluoromethyl)-1H-pyrazol-5-yl]-urea, 0.501 |
| 6 | 4j07 | - | https://www.sciencedirect.com/science/article/pii/S002235491830306X | Biomedical Applications of Lumazine Synthase | 2018 | Y Wei, P Kumar, N Wahome, NJ Mantis- Journal of, 2018 - Elsevier | Oligomeric State of LS, Quaternary Structure , Organism, PDB ID 16, 17, 18 Mycobacterium leprae 19 S. cerevisiae 20 Schizosaccharomyces pombe 21, 1DI0 2F59; 2I0F 2OBX 2O6H 2JFB 1C41 2VI5; 2C9B; 2C92; 2C94; 2C97; 2C9D; 1W19; 1W29 4J07 1EJB 1KYV |
| 7 | 3s99 | - | https://www.sciencedirect.com/science/article/pii/S037811191930160X | Identification and characterization of ABC transporters for carbohydrate uptake in Thermus thermophilus HB8 | 2019 | M Chandravanshi, A Sharma, PD Gupta, SK Mandal- Gene, 2019 - Elsevier | substantiate the relationship of TTHV089 with XBPs, its three-dimensional tertiary structure was predicted All the programs utilized XBP from E. coli (EcXBP, PDB id: 3M9W, open Further, the structural homology search using the predicted model of TTHV089 shows that apart |
| 8 | 3d64 | - | http://www.sciencedirect.com/science/article/pii/S0925443912002165 | S-adenosyl-L-homocysteine hydrolase and methylation disorders: Yeast as a model system | 2013 | O Tehlivets, N Malanovic, M Visram… - … et Biophysica Acta (BBA …, 2013 - Elsevier | ... 1. AdoMet — a principal methyl group donor and more. Beyond its role in protein synthesisand structure, methionine, after its activation to AdoMet by methionine adenosyltransferase,plays a crucial role in many aspects of cellular metabolism. ... |
| 9 | 6vyb | - | https://link.springer.com/article/10.1007/s11224-020-01723-5 | Combination and tricombination therapy to destabilize the structural integrity of COVID-19 by some bioactive compounds with antiviral drugs: insights from | 2021 | HR Abd El-Mageed, DA Abdelrheem, SA Ahmed- Structural Chemistry, 2021 - Springer | SARS-CoV-2 main protease ( PDB ID: 6LU7), (5b) SARS-CoV-2 spike protein domain ( PDB ID: 6VYB ), and (5c) human entry receptor ACE2 ( PDB ID: 1R42 validation was carried out using our previously published work [36] with re-docking of the co-crystal structure (N3) as an |
| 10 | 5vaz | - | https://www.mdpi.com/2079-6382/7/3/72 | DnaG PrimaseA Target for the Development of Novel Antibacterial Agents | 2018 | S Ilic, S Cohen, M Singh, B Tam, A Dayan, B Akabayov- Antibiotics, 2018 - mdpi.com | 3. Structural Features of DnaG Primase: Opportunities for Drug Targeting IDs: 2HAJ, 1T3W [38,41], respectively, S. aureus PDB ID: 2LZN [42], and Vibrio cholera PDB ID: 4IM9 The crystal structure of the complex between the C-terminal part of DnaG (HBD) and the N-terminal |