We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4KYX | 2013 | 7 |
| 3R8C | 2011 | 7 |
| 3UW1 | 2011 | 7 |
| 4O6R | 2014 | 7 |
| 3S6O | 2011 | 7 |
| 3R9R | 2011 | 7 |
| 3GE4 | 2009 | 7 |
| 4OLF | 2015 | 6 |
| 4NI5 | 2013 | 6 |
| 6D8W | 2018 | 6 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5bq2 | - | https://www.sciencedirect.com/science/article/pii/S0223523421004177 | The Mur Enzymes Chink in the Armour of Mycobacterium tuberculosis Cell Wall | 2021 | Y Shinde, I Ahmad, S Surana, H Patel- European Journal of Medicinal, 2021 - Elsevier | Mtb Mur ligases with the same catalytic mechanism share conserved amino acid regions and structural features that can conceivably exploit for the designing of the inhibitors, which can simultaneously target more than one isoforms (MurC-MurF) of the enzyme ... According to sequence homol- ogy search using BLASTp against PBD, 06 proteins structure tem- plates (PDB ID 3SG1, 5BQ2, 3ISS, 1A2N, 1UAE, and 3R38) were picked based on sequence identity and more statistical significance, |
| 2 | 4zju | - | https://www.sciencedirect.com/science/article/pii/S0968089617318217 | A Novel Series of Enoyl Reductase Inhibitors Targeting the ESKAPE Pathogens, Staphylococcus aureus and Acinetobacter baumannii | 2017 | J Kwon, T Mistry, J Ren, ME Johnson- Bioorganic & Medicinal, 2017 - Elsevier | and AbFabI. These enzymes share a high sequence identity (45% identity) and structural similarity (RMSD for all residues < 1 when the various crystal structures of SaFabI are overlaid with the crystal structure of AbFabI). As a |
| 3 | 3gka | - | http://onlinelibrary.wiley.com/doi/10.1002/cctc.201100141/full | Stereopreferences of Old Yellow Enzymes: Structure correlations and sequence patterns in enoate reductases | 2011 | G Oberdorfer, G Steinkellner, C Stueckler? - ChemCatChem, 2011 - Wiley Online Library | ... Table 1. Protein structures used for comparison and cluster generation. Proteins, PDB accession code, Residues (Tyr/Phe/Ile) [a], Stereospecificity [b], Pseudo-atom distance [c] [?], Cluster. ... N-ethylmaleimide reductase, 3gka, Tyr?Tyr, R (ee=62 %)/S [e], 7.5, ... |
| 4 | 3d64 | - | http://www.sciencedirect.com/science/article/pii/S0925443912002165 | S-adenosyl-L-homocysteine hydrolase and methylation disorders: Yeast as a model system | 2013 | O Tehlivets, N Malanovic, M Visram… - … et Biophysica Acta (BBA …, 2013 - Elsevier | ... 1. AdoMet — a principal methyl group donor and more. Beyond its role in protein synthesisand structure, methionine, after its activation to AdoMet by methionine adenosyltransferase,plays a crucial role in many aspects of cellular metabolism. ... |
| 5 | 4y0v | - | https://febs.onlinelibrary.wiley.com/doi/abs/10.1002/1873-3468.14560 | The structure of COPI vesicles and regulation of vesicle turnover | 2023 | RJ Taylor, G Tagiltsev, JAG Briggs- FEBS letters, 2023 - Wiley Online Library | of COPI coat protein structure , we describe how structural and biochemical studies (A) The structure of GDP-bound Arf1 ( PDB 4Y0V ) and GTPbound Arf1 ( PDB 1O3Y). GTP/GDP binding |
| 6 | 3s99 | - | https://www.sciencedirect.com/science/article/pii/S037811191930160X | Identification and characterization of ABC transporters for carbohydrate uptake in Thermus thermophilus HB8 | 2019 | M Chandravanshi, A Sharma, PD Gupta, SK Mandal- Gene, 2019 - Elsevier | substantiate the relationship of TTHV089 with XBPs, its three-dimensional tertiary structure was predicted All the programs utilized XBP from E. coli (EcXBP, PDB id: 3M9W, open Further, the structural homology search using the predicted model of TTHV089 shows that apart |
| 7 | 4j07 | - | https://www.sciencedirect.com/science/article/pii/S002235491830306X | Biomedical Applications of Lumazine Synthase | 2018 | Y Wei, P Kumar, N Wahome, NJ Mantis- Journal of, 2018 - Elsevier | Oligomeric State of LS, Quaternary Structure , Organism, PDB ID 16, 17, 18 Mycobacterium leprae 19 S. cerevisiae 20 Schizosaccharomyces pombe 21, 1DI0 2F59; 2I0F 2OBX 2O6H 2JFB 1C41 2VI5; 2C9B; 2C92; 2C94; 2C97; 2C9D; 1W19; 1W29 4J07 1EJB 1KYV |
| 8 | 4ix8 | - | https://febs.onlinelibrary.wiley.com/doi/abs/10.1002/2211-5463.12715 | Biochemical and structural characterization of tyrosine aminotransferase suggests broad substrate specificity and a two state folding mechanism in Leishmania | 2019 | S Sasidharan, P Saudagar- FEBS Open Bio, 2019 - Wiley Online Library | outlier region. PROSA score of PM0081305 was -8.56 and the score remained in the region of known native structures . The template structure that was taken for modeling ( PDB ID: 4IX8 ) had a PROSA score of -8.89. The structure |
| 9 | 6nb3 | - | https://pubs.acs.org/doi/abs/10.1021/acsmedchemlett.1c00263 | Discovery of Small Molecule Entry Inhibitors Targeting the Fusion Peptide of SARS-CoV-2 Spike Protein | 2021 | X Hu, CZ Chen, M Xu, Z Hu, H Guo, Z Itkin- ACS Medicinal, 2021 - ACS Publications | SARS-CoV-2 entry into host cells relies on the spike (S) protein binding to the human ACE2 receptor. In this study, we investigated the structural dynamics of the viral S protein at the fusion pept... Comparison of the FP binding pocket of the spike protein of SARS-CoV-2 (PDB 6XR8), SARS-CoV-1 (PDB 5WRG), and MERS (PDB 6NB3). The spike protein is rendered in ribbons with the FP colored in magenta and the HR1 domain in blue. |
| 10 | 6vyb | - | https://link.springer.com/article/10.1007/s11224-020-01723-5 | Combination and tricombination therapy to destabilize the structural integrity of COVID-19 by some bioactive compounds with antiviral drugs: insights from | 2021 | HR Abd El-Mageed, DA Abdelrheem, SA Ahmed- Structural Chemistry, 2021 - Springer | SARS-CoV-2 main protease ( PDB ID: 6LU7), (5b) SARS-CoV-2 spike protein domain ( PDB ID: 6VYB ), and (5c) human entry receptor ACE2 ( PDB ID: 1R42 validation was carried out using our previously published work [36] with re-docking of the co-crystal structure (N3) as an |