We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6NB4 | 2019 | 7 |
| 3GE4 | 2009 | 7 |
| 3HHJ | 2009 | 7 |
| 4WHX | 2014 | 7 |
| 4F4H | 2012 | 7 |
| 4QTP | 2014 | 7 |
| 6C5V | 2018 | 7 |
| 4W5K | 2014 | 7 |
| 3IX6 | 2009 | 7 |
| 7RY7 | 2022 | 7 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3lgj | - | https://www.nature.com/articles/s41598-017-15774-y | Structural Basis for DNA Recognition of a Single-stranded DNA-binding Protein from Enterobacter Phage Enc34 | 2017 | E Cernooka, J Rumnieks, K Tars, A Kazaks- Scientific reports, 2017 - nature.com | Structural homologs of the ORF6 protein were identified using the Dali server ... the number of superimposed atoms were ... 59 (PDB ID: 3LGJ) and 58 (PDB ID: 3VDY) |
| 2 | 3hn6 | - | https://febs.onlinelibrary.wiley.com/doi/abs/10.1002/1873-3468.13289 | Functional and solution structure studies of amino sugar deacetylase and deaminase enzymes from Staphylococcusaureus | 2018 | JS Davies, D Coombes, CR Horne, FG Pearce- FEBS, 2018 - Wiley Online Library | burgdorferi ( PDB id: 3HN6 )). This is the first time a dimeric oligomeric state for a bacterial NagB has been reported Since there are no representative NagB dimers reported, we constructed two possible dimers of NagB from the E. coli hexamer ( PDB id oligomeric structure |
| 3 | 3ecd | - | http://mcb.asm.org/content/28/14/4507.short | Single-stranded oligonucleotides can inhibit cytokine production induced by human toll-like receptor 3 | 2008 | CT Ranjith-Kumar, KE Duffy, JL Jordan? - Molecular and cellular biology, 2008 - Am Soc Microbiol | ... (C) The locations of peptides P1 and P2 within the three-dimensional model of 3ECD (PDB accession number, 1ZIW). The peptide spanning residues 211 to 222 is in green, and the one spanning residues 560 to 583 is in yellow. ... |
| 4 | 5dd7 | 5cm7 | https://www.sciencedirect.com/science/article/pii/B9780444639301000119 | Analysis of the Protein Binding Sites for Thiamin and Its Derivatives to Elucidate the Molecular Mechanisms of the Noncoenzyme Action of Thiamin (Vitamin B1) | 2017 | VI Bunik, VA Aleshin- Studies in Natural Products Chemistry, 2017 - Elsevier | Elucidation of protein targets of the noncoenzyme thiamin action is advanced through structure -based identification of thiamin- or derivatives-binding protein patterns, bioinformatics analysis of their distribution among proteins and pathways, and experimental verification of the ... Active sites of the enzymes of thiamin metabolism. (A) Bacterial ThMP kinase with ThMP, nonhydrolyzable analog of ATP, and bound ions of magnesium (green) and potassium (purple) (PDB ID: 5DD7), the protein carbons in dark g |
| 5 | 7jzl | 7jzn | https://pubs.acs.org/doi/abs/10.1021/acs.jcim.1c00766 | Allosteric Control of Structural Mimicry and Mutational Escape in the SARS-CoV-2 Spike Protein Complexes with the ACE2 Decoys and Miniprotein Inhibitors: A | 2021 | GM Verkhivker, S Agajanian, DY Oztas- Journal of Chemical, 2021 - ACS Publications | Allosteric Control of Structural Mimicry and Mutational Escape in the SARS-CoV-2 Spike Protein Complexes with the ACE2 Decoys and Miniprotein Inhibitors: A Network-Based Approach for Mutational Profiling of Binding and Signaling |
| 6 | 5bq2 | - | https://www.sciencedirect.com/science/article/pii/S0223523421004177 | The Mur Enzymes Chink in the Armour of Mycobacterium tuberculosis Cell Wall | 2021 | Y Shinde, I Ahmad, S Surana, H Patel- European Journal of Medicinal, 2021 - Elsevier | Mtb Mur ligases with the same catalytic mechanism share conserved amino acid regions and structural features that can conceivably exploit for the designing of the inhibitors, which can simultaneously target more than one isoforms (MurC-MurF) of the enzyme ... According to sequence homol- ogy search using BLASTp against PBD, 06 proteins structure tem- plates (PDB ID 3SG1, 5BQ2, 3ISS, 1A2N, 1UAE, and 3R38) were picked based on sequence identity and more statistical significance, |
| 7 | 6vxx | 6vyb | https://pubs.rsc.org/en/content/articlehtml/2021/ra/d0ra09555a | Interaction analyses of SARS-CoV-2 spike protein based on fragment molecular orbital calculations | 2021 | K Akisawa, R Hatada, K Okuwaki, Y Mochizuki- RSC Advances, 2021 - pubs.rsc.org | Here, we report on interaction analyses of the spike protein in both closed ( PDB -ID: 6VXX ) and open interaction energies were evaluated for both structures , and a mutual comparison indicated considerable losses of stabilization energies in the open structure , especially in |
| 8 | 5idv | - | https://scripts.iucr.org/cgi-bin/paper?mf5027 | Photocage-initiated time-resolved solution X-ray scattering investigation of protein dimerization | 2018 | I Josts, S Niebling, Y Gao, M Levantino, H Tidow- IUCrJ, 2018 - scripts.iucr.org | A total of 30 independent DAMMIF (Franke & Svergun, 2009) runs were performed to generate the initial structure pool (fit not shown). Calculated difference curves between the crystallographic dimer and monomer ( PDB codes 3b60 and 5idv ) show features similar to |
| 9 | 4twr | - | https://www.sciencedirect.com/science/article/pii/S1367593120301289 | Molecular evolution and functional divergence of UDP-hexose 4-epimerases | 2020 | S Fushinobu- Current Opinion in Chemical Biology, 2020 - Elsevier | Figure 3. Structural basis for the substrate specificity of group 1b and group 2b enzymes The rotated conformation structure was obtained using the S124A/Y149F double mutant ... Substrate-free structures of GalEs from Bacillus anthracis (BAS5114, PDB: 2C20) and Brucella abortus (PDB: 4TWR) are also available in the database |
| 10 | 6tz8 | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7669531/ | Current Challenges and Opportunities in Designing ProteinProtein Interaction Targeted Drugs | 2020 | WH Shin, K Kumazawa, K Imai- and Applications in, 2020 - ncbi.nlm.nih.gov | Phase Reached*, Modality*, Drug PDB ID**, Drug-Protein PDB ID*, Target PPI PDB ID binding protein 1A inhibitor, Inhibitor, Approved (1994), Small molecule, FK5, 1BKF, 6TZ8 (FKBP12/CNA 2.8 resolution by cryo-electron microscopy (cryo-EM).65 The cryo-EM structure revealed ... 6TZ8 (FKBP12/CNA/CNB) (C. neoformans) |