We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3VAW | 2012 | 6 |
| 4PFZ | 2014 | 6 |
| 3RD8 | 2011 | 6 |
| 4OLF | 2015 | 6 |
| 4YK1 | 2016 | 6 |
| 3QK8 | 2011 | 6 |
| 6PZJ | 2019 | 6 |
| 2N3S | 2015 | 6 |
| 4Q1T | 2014 | 6 |
| 3HZG | 2009 | 6 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3lgj | - | https://www.nature.com/articles/s41598-017-15774-y | Structural Basis for DNA Recognition of a Single-stranded DNA-binding Protein from Enterobacter Phage Enc34 | 2017 | E Cernooka, J Rumnieks, K Tars, A Kazaks- Scientific reports, 2017 - nature.com | Structural homologs of the ORF6 protein were identified using the Dali server ... the number of superimposed atoms were ... 59 (PDB ID: 3LGJ) and 58 (PDB ID: 3VDY) |
| 2 | 2khr | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4404324/ | Identification of outer membrane and exoproteins of carbapenem-resistant multilocus sequence type 258 Klebsiella pneumoniae | 2015 | AJ Brinkworth, CH Hammer, LR Olano, SD Kobayashi- PloS one, 2015 - ncbi.nlm.nih.gov | are based on template proteins that have been submitted to the RCSB protein database as crystal structure or NMR data ID, Protein, Length (aa), 1 st Hit PDB , Protein Template, Conf, Id, 2 nd Hit PDB , Template, Conf G8VZH0, Hyp, 1007, 2bcm, DaaE adhesin, 31, 25, 2khr , MbtH |
| 3 | 3hgb | - | http://www.sciencedirect.com/science/article/pii/S1097276515004529 | Identification of a Class of Protein ADP-Ribosylating Sirtuins in Microbial Pathogens | 2015 | JGM Rack, R Morra, E Barkauskaite, R Kraehenbuehl… - Molecular cell, 2015 - Elsevier | ... SpyGcvH-L structure is shown in black and canonical GcvH of cattle (PDB: 3KLR), pea (PDB: 1DMX), and M. tuberculosis (PDB: 3HGB) in orange, green, and yellow, respectively. Residue numbers for GcvH-L are given. ... |
| 4 | 5elo | - | https://www.nature.com/articles/s41467-022-33736-5 | Lysyl-tRNA synthetase, a target for urgently needed M. tuberculosis drugs | 2022 | SR Green, SH Davis, S Damerow, CA Engelhart- Nature, 2022 - nature.com | structure of M. tuberculosis LysRS was solved through molecular replacement using the structure of Cryptosporidium parvum LysRS ( PDB : 5elo ) 22 and the structure was refined using |
| 5 | 6nb3 | - | https://www.mdpi.com/1999-4915/13/8/1615 | What Binds Cationic Photosensitizers Better: Brownian Dynamics Reveals Key Interaction Sites on Spike Proteins of SARS-CoV, MERS-CoV, and SARS-CoV-2 | 2021 | V Fedorov, E Kholina, S Khruschev, I Kovalenko- Viruses, 2021 - mdpi.com | M-protein defines the shape of the viral envelope organizing CoVs assembly in the interaction with all other major structural proteins [9 Computational virology tools contribute greatly to the understanding of viral structure , infectivity and pathogenesis, and design of antiviral drugs ... The models of S-proteins of SARS-CoV and MERS-CoV were based on cryo-EM structures from the Protein Data Bank (PDB) with IDs 6NB3 and 5X58, respectively. |
| 6 | 3ix6 | - | https://www.nature.com/articles/s41598-019-48940-5 | Analysis of mutations leading to para-aminosalicylic acid resistance in Mycobacterium tuberculosis | 2019 | B Pandey, S Grover, J Kaur, A Grover- Scientific reports, 2019 - nature.com | crystal structures of the ThyA enzyme in Brucella melitensis (PDBID: 3IX6 ), M. tuberculosis 3QJ7) 20 , Enterococcus faecalis ( PDB IF: 6QYA), and Escherichia coli ( PDB ID: 1AXW Comparative analysis of the binding free energy, secondary structure elements, and free energy |
| 7 | 5br9 | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/prot.26545 | Protein target highlights in CASP15: Analysis of models by structure providers | 2023 | LT Alexander, J Durairaj- Proteins: Structure, 2023 - Wiley Online Library | structures superimposed on Ferrichrome-bound FhuA ( PDB ( PDB 1QFG, salmon) and FhuA from the target ( PDB 8B14, Red star: first resolved N-terminus of the different structures ... Structure of A. aeolicus TsaB. (A) The overlaid crystal structures of E. coli TsaB (PDB: 4YDU), T. maritima TsaB (PDB: 6N9A), S. typhimurium TsaB (PDB: 3ZET), P. s aeruginosa (PDB: 5BR9) |
| 8 | 4ggq | - | https://www.sciencedirect.com/science/article/pii/S0959440X18300976 | Enzyme targets for drug design of new anti-virulence therapeutics | 2018 | CM Kahler, M Sarkar-Tyson, EA Kibble- opinion in structural, 2018 - Elsevier | Mip from Burkholderia pseudomallei as a complex with a pipecolic acid derivative (CJ40) ( PDB : 4GGQ ) d) Ribbon diagram of the structure of EptA ( PDB : 5FGN a detailed understanding of the mechanism of substrate binding and catalysis will enable a structure guided approach |
| 9 | 3ido | - | https://www.sciencedirect.com/science/article/pii/S2451929417303169 | A Water-Bridged Cysteine-Cysteine Redox Regulation Mechanism in Bacterial Protein Tyrosine Phosphatases | 2017 | JB Bertoldo, T Rodrigues, L Dunsmore, FA Aprile- Chem, 2017 - Elsevier | Using the FATCAT algorithm operating in rigid mode, we found that the structures of phosphatases from Vibrio cholera O395 (PDB: 4LRQ52), Entamoeba histolytica (PDB: 3IDO53), S. aureus (PDB: 3ROF54), ... and Geobacillus stearothermophilus (PDB: 4PIC) shared the highest structural similarity. |
| 10 | 3gka | - | https://link.springer.com/article/10.1007/s00253-019-10287-2 | Two new ene-reductases from photosynthetic extremophiles enlarge the panel of old yellow enzymes: CtOYE and GsOYE | 2020 | MS Robescu, M Niero, M Hall, L Cendron- Applied Microbiology, 2020 - Springer | The most peculiar structural features of each enzyme are depicted in bright orange (loop 3 In the active site of GsOYE structure , a chloride anion, present in the crystallization In the structures of the GsOYE complexes, both para-hydroxybenzaldehyde (pHBA; PDB : 6S31) (Fig |