Seattle Structural Genomics Center for Infectious Disease

Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Manually reviewed citations

# PDB Additional SSGCID structures cited Link Title Year Citation Highlighted abstract
1 6nb6 - Cryo-EM analysis of the post-fusion structure of the SARS-CoV spike glycoprotein 2020 X Fan, D Cao, L Kong, X Zhang- Nature communications, 2020 - However, structural information of the post-fusion S2 from these highly pathogenic human-infecting The structures of pre- and post-fusion SARS-CoV S glycoprotein dramatically differ This structure suggests potential targets for the development of vaccines and therapies against
2 6nb6 - Structures of human antibodies bound to SARS-CoV-2 spike reveal common epitopes and recurrent features of antibodies 2020 CO Barnes, AP West Jr, KE Huey-Tubman- Cell, 2020 - Elsevier Share. Export. Advanced. Cell Cell. Volume 182, Issue 4, 20 August 2020, Pages 828-842.e16. Journal home page for Cell. Article. Structures of Human Antibodies Bound to SARS-CoV-2 Spike Reveal Common Epitopes and Recurrent Features of Antibodies
3 3eiy - Utilizing graph machine learning within drug discovery and development 2021 T Gaudelet, B Day, AR Jamasb, J Soman- Briefings in, 2021 - structural relationships between their amino acid residues [19, 20] and small molecule drugs as graphs relating their constituent atoms and chemical bonding structure [ data structures . Figure 7. Illustration of (A) a protein (PDB accession: 3EIY) and (B) its graph representation derived based on intramolecular distance with cut-off threshold set at 10Å.
4 3sbx - Structures of the calcium-activated, non-selective cation channel TRPM4 2017 J Guo, J She, W Zeng, Q Chen, X Bai, Y Jiang- Nature, 2017 - cytosolic region of about 700 amino acid residues with uncharacterized structure and function particle electron cryo-microscopy (cryo-EM), revealing the unique molecular architecture of the Along with electrophysiological analysis, we also elucidated the structural basis of ATP ... structural comparison between the NBD of ATP-bound TRPM4 and AMP-bound LOG protein (PDB accession number 3SBX).
5 6ws6 - Neutralizing antibody and soluble ACE2 inhibition of a replication-competent VSV-SARS-CoV-2 and a clinical isolate of SARS-CoV-2 2020 JB Case, PW Rothlauf, RE Chen, Z Liu, H Zhao- Cell host &, 2020 - Elsevier Using an infectious molecular clone of vesicular stomatitis virus (VSV) expressing eGFP as a marker of infection, we replaced the glycoprotein gene (G) with the spike protein of SARS-CoV-2 (VSV-eGFP-SARS-CoV-2) and developed a high-throughput-imaging-based neutralization assay at biosafety level 2 ... VIR antibody set Pinto et al., 2020 S309 PDB: 6WS6
6 3md0 - Structure-function relationships of the G domain, a canonical switch motif 2011 A Wittinghofer, IR Vetter - Annual review of biochemistry, 2011 - ... Two structures of putative ArgK proteins have been solved by structural genomics (2www,3md0), which have an ExxG motif instead of DxxG and alpha-helical N- and C-terminal extensions ...
7 3ke1 4emd, 4ed4, 4dxl, 3q8h Molecular Recognition in Chemical and Biological Systems 2015 E Persch, O Dumele, F Diederich - … Chemie International Edition, 2015 - Wiley Online Library ... c) Cocrystal structure of ligand 12 bound to TGT (1.68 Å resolution, PDB ID: 3RR4)51 and d ...reorganization of the protein and the changes in the water network solvation occurring upon minorchanges in the ligand structures.52 Without high-resolution structural information, a ...
8 5jry - Molecular Mechanisms of Bacterial Bioluminescence 2018 E Brodl, A Winkler, P Macheroux- Computational and Structural, 2018 - Elsevier we also show stick models of the substrate analog (indole-3-acetaldehyde – blue) and the cofactor (NADP+ − grey) in the respective binding sites obtained from the superposition of the LuxC model with indole-3-acetaldehyde dehydrogenase from Pseudomonas syringae (PDB 5IUW) and from the structure of an aldehyde dehydrogenase from Burkholderia multivorans (PDB 5JRY), respectively.
9 3dah - Phosphoribosyl diphosphate (PRPP): biosynthesis, enzymology, utilization, and metabolic significance 2017 B Hove-Jensen, KR Andersen, M Kilstrup- Microbiology and, 2017 - Am Soc Microbiol been crystallized, and high-resolution structures have been determined (4952). A three-dimensional structure has been determined also for the PRPP synthase from the Gram-negative bacterium Burkholderia (Pseudomonas) pseudomallei strain 1710b ( PDB code 3dah ) (53
10 6wpt - A cross-reactive human IgA monoclonal antibody blocks SARS-CoV-2 spike-ACE2 interaction 2020 M Ejemel, Q Li, S Hou, ZA Schiller, JA Tree- Nature, 2020 - COVID-19 caused by SARS-CoV-2 has become a global pandemic requiring the development of interventions for the prevention or treatment to curtail mortality and morbidity. No vaccine to boost mucosal immunity, or as a therapeutic, has yet been developed to SARS-CoV-2. ... However, this predicted epitope of MAb362 is different from the other recently reported MAb complexes to the SARS-CoV-2-RBD (Fig. 3c and Supplementary Fig. 5), including: CR302217 (PDB: 6W41); S30916 (PDB: 6WPT); REGN10933 and REGN1098725;