We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6TYS | 2020 | 20 |
| 6WS6 | 2020 | 19 |
| 3SDO | 2011 | 19 |
| 3IML | 2009 | 18 |
| 3EOO | 2008 | 17 |
| 4IX8 | 2014 | 17 |
| 3IJP | 2009 | 17 |
| 3SWO | 2011 | 16 |
| 3TCQ | 2012 | 16 |
| 3P0X | 2010 | 15 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5udf | - | https://pubs.acs.org/doi/abs/10.1021/acs.chemrev.1c00055 | Structure, Assembly, and Function of Tripartite Efflux and Type 1 Secretion Systems in Gram-Negative Bacteria | 2021 | I Alav, J Kobylka, MS Kuth, KM Pos, M Picard- Chemical, 2021 - ACS Publications | Journal Logo. Structure , Assembly, and Function of Tripartite Efflux and Type 1 Secretion Systems in Gram-Negative Bacteria. Ilyas Alav Ilyas Alav. Institute of Microbiology and Infection, College of Medical and Dental Sciences |
| 2 | 3dah | - | https://journals.asm.org/doi/abs/10.1128/MMBR.00040-16 | Phosphoribosyl diphosphate (PRPP): biosynthesis, enzymology, utilization, and metabolic significance | 2017 | B Hove-Jensen, KR Andersen, M Kilstrup- Microbiology and, 2017 - Am Soc Microbiol | been crystallized, and high-resolution structures have been determined (4952). A three-dimensional structure has been determined also for the PRPP synthase from the Gram-negative bacterium Burkholderia (Pseudomonas) pseudomallei strain 1710b ( PDB code 3dah ) (53 |
| 3 | 7jzl | - | https://www.sciencedirect.com/science/article/pii/S0022283621003892 | A brief history of de novo protein design: minimal, rational, and computational | 2021 | DN Woolfson- Journal of Molecular Biology, 2021 - Elsevier | For comparison, the whole PDB is doubling in size approximately every 67 years. There are now over 100 structures of de novo peptides and proteins, which is a good resource ... Figure 2. A gallery of high-resolution de novo designed peptide and protein structures .. additional protein chains are shown in grey these are for protein fusions to the designs (6FES99) or with targeted protein-protein interactions (4OYD,5VID,6IWB,6XXV,7JZL,6YWC) |
| 4 | 4mow | - | https://pubs.acs.org/doi/abs/10.1021/acscentsci.1c00519 | Discovery of SARS-CoV-2 Papain-like Protease Inhibitors through a Combination of High-Throughput Screening and a FlipGFP-Based Reporter Assay | 2021 | C Ma, MD Sacco, Z Xia, G Lambrinidis- ACS Central, 2021 - ACS Publications | Using the structure with PDB ID 7JRN as a template, we docked the potent analogues Jun9-53-2, Jun9-72-2, and Jun9-75-4 in the SARS-CoV-2 PL pro drug-binding site. The stability of |
| 5 | 3qha | - | https://chemistry-europe.onlinelibrary.wiley.com/doi/abs/10.1002/cbic.201300321 | Structure and Activity of NADPH-Dependent Reductase Q1EQE0 from Streptomyces kanamyceticus, which Catalyses the R-Selective Reduction of an Imine Substrate | 2013 | M RodrguezMata, A Frank, E Wells, F Leipold- , 2013 - Wiley Online Library | ... 2. For structure solution, the highest sequence homologue in the Protein Data Bank was an ... to members of the gamma-hydroxybutyrate dehydrogenase (GHBDH) family such as PDB structures 3PEF ... These are 3QHA (from Mycobacterium avium 104) and 3L6D (from P. putida ... |
| 6 | 6nb3 | 6nb7, 6nb4, 6nb6, 6vyb, 6vxx | https://link.springer.com/article/10.1007/s00018-020-03580-1 | Protein structure analysis of the interactions between SARS-CoV-2 spike protein and the human ACE2 receptor: from conformational changes to novel | 2020 | I Mercurio, V Tragni, F Busto, A De Grassi- Cellular and Molecular, 2020 - Springer | Download PDF. Download PDF. Original Article; Published: 04 July 2020. Protein structure analysis of the interactions between SARS-CoV-2 spike protein and the human ACE2 receptor: from conformational changes to novel neutralizing antibodies |
| 7 | 7lxy | 7ly2, 7lxz, 7ly3 | https://www.nature.com/articles/s41423-021-00752-2 | Neutralizing antibodies for the prevention and treatment of COVID-19 | 2021 | L Du, Y Yang, X Zhang- Cellular & Molecular Immunology, 2021 - nature.com | Severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) initiates the infection process by binding to the viral cellular receptor angiotensin-converting enzyme 2 through the receptor-binding domain (RBD) in the S1 subunit of the viral spike (S) protein. ... a–e Cryo-EM structures of the SARS-CoV-2 S trimer bound to NTD-targeting nAbs a S2L28 (PDB 7LXZ), b S2M28 (PDB 7LY2), c S2X333 (PDB 7LXY), d 4-8 (PDB 7LQV), and e 4A8 (PDB 7C2L). |
| 8 | 4kyx | - | https://www.nature.com/articles/s41477-018-0220-z | Contribution of isopentenyl phosphate to plant terpenoid metabolism | 2018 | LK Henry, ST Thomas, JR Widhalm, JH Lynch- Nature plants, 2018 - nature.com | To precisely define the structural basis for substrate selectivities of AtNudx1, we next obtained diffraction-quality crystals for atomic superposition of the previously reported catalytically impaired AtNudx1 mutant, E56A, with GPP bound ( pdb 5GP0) and our structure with IPP |
| 9 | 7jv2 | 7jvc, 7jw0, 7ra8, 7ral | https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1010260 | Structural and antigenic variations in the spike protein of emerging SARS-CoV-2 variants | 2022 | A Mittal, A Khattri, V Verma- PLoS Pathogens, 2022 - journals.plos.org | Recent structural and functional studies have mapped the -CoV-2 variants; (2) the structural basis for antibody-mediated fitness, and in conjunction with the structures of the spike-nAb ... the neutralization mechanism involves direct competition with the ACE2 receptor. These antibodies include C002 (PDB: 7K8S) [70], C104 (PDB: 7K8U) [70], S2H13 (PDB: 7JV2) [77], C119 (PDB: 7K8U) [70], C121 (PDB: 7K8X) [70], LY-CoV555 (PDB: 7KMG), DH1041 (7LAA), COVA2-15 (EMD-22061) [82], 2–43 (EMD-22275) [94], |
| 10 | 7k43 | 7k4n | https://www.nature.com/articles/s41401-021-00851-w | Structure genomics of SARS-CoV-2 and its Omicron variant: drug design templates for COVID-19 | 2022 | C Wu, W Yin, Y Jiang, HE Xu- Acta Pharmacologica Sinica, 2022 - nature.com | on uncovering structures and functions for structural biology of SARS-CoV-2 and discuss important biological issues that remain to be addressed. We present the examples of structure - ... S2E12 (represented as a cyan surface) binds to the “up” conformation of SARS-CoV-2 S RBD (PDB: 7K4N); S2M11 (represented as a brown surface) binds to the “down” conformation of SARS-CoV-2 S RBD (PDB: 7K43); |