We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5EJ2 | 2015 | 5 |
| 4NPC | 2013 | 5 |
| 2LKY | 2011 | 5 |
| 4EX4 | 2012 | 5 |
| 3DMS | 2008 | 5 |
| 4XEU | 2015 | 5 |
| 7JXC | 2020 | 5 |
| 2LBB | 2011 | 5 |
| 4Q6U | 2014 | 5 |
| 4LGO | 2014 | 5 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3mx6 | - | https://www.sciencedirect.com/science/article/pii/S0141813019301175 | Discovery of a new class of type 1 methionine aminopeptidases that have relaxed substrate specificity | 2019 | SC Bala, N Haque, V Pillalamarri, R Reddi- International journal of, 2019 - Elsevier | 3MX6 , R. prowazekii, 99% (C), 1% (L) Based on this analysis, MetAP1n has different active site architecture and hence has a substrate preference for leucine in addition 3c. Column 2 describes the result analysis of the HSSP file associated with EcMetAP1a structure ( PDB : 1C21 |
| 2 | 4g7f | - | https://www.sciencedirect.com/science/article/pii/S1093326319305844 | In silico repositioning of etidronate as a potential inhibitor of the Trypanosoma cruzi enolase | 2020 | EA Valera-Vera, M Say, C Reigada- Journal of Molecular, 2020 - Elsevier | Preparation of the PDBQT files (Protein Data Bank, partial charge (Q), and atom type (T)) was performed using AutoDock Tools v1.5.6 [29]. A search in the Protein Data Bank ( PDB ) [30] was carried to find the crystal structure of TcENO ( PDB ID: 4G7F , Resolution: 2.4 , R |
| 3 | 4g5d | - | https://link.springer.com/article/10.1186/s13071-020-3883-z | Leishmania braziliensis prostaglandin F2 synthase impacts host infection | 2020 | EVC Alves-Ferreira, TR Ferreira, P Walrad, PM Kaye- Parasites & vectors, 2020 - Springer | 1b) and the 3D structure (Fig c 3D sequence alignments of protein sequences of LmjPGF2S (PBD ID 4G5D , in grey) and human ortholog 51.4% similarity and 34.3% identity, modelling using the Research Collaboratory for Structural Bioinformatics (RCSB) PDB suggests that |
| 4 | 5elo | 6c86, 5vl1, 6aqg | https://onlinelibrary.wiley.com/doi/abs/10.1002/prot.25699 | Side chain rotameric changes and backbone dynamics enable specific cladosporin binding in Plasmodium falciparum lysyltRNA synthetase | 2019 | J ChhibberGoel, A Sharma- Proteins: Structure, Function, and, 2019 - Wiley Online Library | ( PDB : apo 6C86, holo 5ELO ) and M. ulcerans (MuKRS) ( PDB : apo 5VL1, holo re-arrangements and are noted as 1 to 4 for all the four PDB data sets (Table 1 and Fig. 1). In based on structural analyses. Our analyses also provide a platform for structure -guided |
| 5 | 4eqy | - | https://www.mdpi.com/2218-273X/10/2/266 | Structure-Based Virtual Screening of Pseudomonas aeruginosa LpxA Inhibitors Using Pharmacophore-Based Approach | 2020 | BV Bhaskar, TMC Babu, A Rammohan, GY Zheng- Biomolecules, 2020 - mdpi.com | 1J2Z) [22], Leptospira interrogans ( PDB ID: 3HSQ) [23] and Burkholderia thailandensis ( PDB ID: 4EQY ) [24] were In this study, the PaLpxA structure was superimposed on LpxA orthologs from different bacterial Organism PDB ID Monomer A Monomer B RMSD () Pocket Size ( |
| 6 | 3kw3 | - | http://www.biomedcentral.com/1471-2180/11/116 | The crystal structure of alanine racemase from Streptococcus pneumoniae, a target for structure-based drug design | 2011 | H Im, ML Sharpe, U Strych, M Davlieva? - BMC Microbiology, 2011 - biomedcentral.com | ... of this enzyme from a further six microorganisms have been deposited in the PDB: Bartonella henselae (PDB ID 3KW3), Oenococcus oeni ... are listed in Table 1. Structure factors and final atomic coordinates for AlrSP have been deposited in the Protein Databank (PDB ID: 3S46). ... |
| 7 | 3sbx | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5989583/ | Genomewide characterisation of the genetic diversity of carotenogenesis in bacteria of the order Sphingomonadales | 2018 | S Siddaramappa, V Viswanathan- Microbial, 2018 - ncbi.nlm.nih.gov | using blastp analysis and acquired from GenBank, rast or the Protein Data Bank ( PDB ) http://espript.ibcp.fr/ESPript/ESPript/) to depict similarities and secondary structure information In this context, the structural and functional similarities between different CrtI homologues need |
| 8 | 5u9p | - | https://www.sciencedirect.com/science/article/pii/S0022286023007160 | Synthesis, crystallographic and spectroscopic investigation, chemical reactivity, hyperpolarizabilities and in silico molecular docking study of (Z)-2N-(tert | 2023 | FZ Boudjenane, F Triki-Baara, N Boukabcha- of Molecular Structure, 2023 - Elsevier | In Table 9, binding affinities for various poses in the 5U9P inhibitor of the investigated ligand between the molecule and the residues of the proteins 5U9P , 4HP8, 4Z9X, 1VL8, 4IBO and |
| 9 | 3k2c | - | https://www.sciencedirect.com/science/article/pii/S016158901930197X | The Schistosoma mansoni cyclophilin A epitope 107-121 induces a protective immune response against schistosomiasis | 2019 | TT de Melo, MM Mendes, CC Alves, GB Carvalho- Molecular, 2019 - Elsevier | The resulting structure was predicted using six templates (4I9Y: e3 sumo-protein ligase Cyclophilin from Homo sapiens, variant A; 1IHG: bovine cyclophilin 40, 3K2C : peptidyl-prolyl cuniculi; 1XO7: Cyclophilin from Trypanosoma cruzithe bovine Cyclophilin 40 ( PDB code: c1ihgA |
| 10 | 6q04 | - | https://www.sciencedirect.com/science/article/pii/S0024320521007608 | Evolutionary selectivity of amino acid is inspired from the enhanced structural stability and flexibility of the folded protein | 2021 | SJA Rao, NP Shetty- Life Sciences, 2021 - Elsevier | Evolutionary selectivity of amino acid is inspired from the enhanced structural stability and flexibility of the folded protein certain positions is governed by a well-orchestrated feedback mechanism, which follows increased stability and flexibility in the folded structure compared to |