We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4L82 | 2013 | 5 |
| 3PXU | 2010 | 5 |
| 2LBB | 2011 | 5 |
| 4J07 | 2013 | 5 |
| 4JNQ | 2013 | 5 |
| 4HWG | 2012 | 5 |
| 5W25 | 2017 | 5 |
| 7JXC | 2020 | 5 |
| 4GHK | 2012 | 5 |
| 3R6F | 2011 | 5 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6ns0 | - | https://www.sciencedirect.com/science/article/pii/S0039128X21001240 | Synthesis of erythrodiol C-ring derivatives and their activity against Chlamydia trachomatis | 2021 | O Kazakova, L Rubanik, A Lobov, N Poleshchuk- Steroids, 2021 - Elsevier | activity, for example, the presence of ,-unsaturated system in the structure of CDDO (2-cyano-3,12-diooxoolean-1,9-dien-28-oic acid) has a sufficient influence on anti-inflammatory, anti-diabetic nephropathy, and cytotoxic activities [14], [15] Figure 1. Structures of oleanolic |
| 2 | 6an0 | - | https://www.mdpi.com/2076-2607/8/5/732 | The Role of Gene Elongation in the Evolution of Histidine Biosynthetic Genes | 2020 | S Del Duca, S Chioccioli, A Vassallo, LM Castronovo- Microorganisms, 2020 - mdpi.com | 6AN0 Elizabethkingia anophelis Amino acid sequences from HisA/HisF, IGPD, and HDH, available in the PDB , were downloaded from UniProt [29], aligned using BioEdit [30] through the ClustalW tool [31], and the conservation of the secondary structure organization was |
| 3 | 6q04 | - | https://www.sciencedirect.com/science/article/pii/S0024320521007608 | Evolutionary selectivity of amino acid is inspired from the enhanced structural stability and flexibility of the folded protein | 2021 | SJA Rao, NP Shetty- Life Sciences, 2021 - Elsevier | Evolutionary selectivity of amino acid is inspired from the enhanced structural stability and flexibility of the folded protein certain positions is governed by a well-orchestrated feedback mechanism, which follows increased stability and flexibility in the folded structure compared to |
| 4 | 3k2h | - | https://onlinelibrary.wiley.com/doi/abs/10.1111/tpj.13983 | Targeting plant DIHYDROFOLATE REDUCTASE with antifolates and mechanisms for genetic resistance | 2018 | MG Corral, J Haywood, LH Stehl, KA Stubbs- The Plant, 2018 - Wiley Online Library | The homology models of A. thaliana DHFR‐TS1 and DHFR‐TS2 were created ab initio based on the structure of the bifunctional DHFR‐TS enzyme from B. bovis (PDB 3K2H; Begley et al., 2011), using the I‐TASSER server (Zhang, 2008). |
| 5 | 3qh4 | 3s4k | http://www.sciencedirect.com/science/article/pii/S1286457912002110 | Cytosolic lipid inclusions formed during infection by viral and bacterial pathogens | 2012 | M Stehr, AA Elamin, M Singh - Microbes and Infection, 2012 - Elsevier | ... Furthermore the three-dimensional structures of the esterases Rv0045c (PDB 3P2M) [48], Rv1847 (PDB 3S4K), and LipW (3QH4) from M. tuberculosis have been determined, but unfortunately it is not known whether these enzymes are involved in TAG hydrolysis. 5.5. ... |
| 6 | 3u03 | - | http://www.hindawi.com/journals/ipid/2012/843509/abs/ | Pyoverdine, the Major Siderophore in Pseudomonas aeruginosa, Evades NGAL Recognition | 2012 | ME Peek, A Bhatnagar, NA McCarty? - Interdisciplinary Perspectives on Infectious Diseases, 2012 - hindawi.com | ... Recently, Strong and coworkers crystallized NGAL bound to pyochelin (PDB 3U03, deposited at the RCSB protein data bank) and the crystal structure clearly shows that pyochelin docks inside the calyx of NGAL but without binding avidly. ... |
| 7 | 3oj6 | - | https://www.nature.com/articles/s41467-022-33714-x | Sequential action of a tRNA base editor in conversion of cytidine to pseudouridine | 2022 | S Kimura, V Srisuknimit, KL McCarty, PC Dedon- Nature, 2022 - nature.com | as blasticidine-S deaminase ( PDB 3oj6 ) and cytidine deaminase ( PDB 4eg2). The structure of Blasticidine-S deaminase (BSD) is highly similar to the predicted structure of TrcP-NTD |
| 8 | 4egq | - | https://www.sciencedirect.com/science/article/pii/S0167732217360439 | Identification of natural inhibitors against Acinetobacter baumanniid-alanine-d-alanine ligase enzyme: A multi-spectrum in silico approach | 2018 | S Ahmad, S Raza, SW Abbasi, SS Azam- Journal of Molecular Liquids, 2018 - Elsevier | The protein after retrieval from PDB was subjected to a preparation phase, where only one 5), with minor effect on the overall structure baumannii), (3V4Z, Yersinia pestis), (4DGJ, Burkholderia xenovorans), (4EGO, Burkholderia ambifaria), ( 4EGQ , Burkholderia pseudomallei) |
| 9 | 2kok | 2mu0 | https://link.springer.com/article/10.1007/s00894-018-3885-3 | Structure and function prediction of arsenate reductase from Deinococcus indicus DR1 | 2019 | D Chauhan, PA Srivastava, V Agnihotri- Journal of molecular, 2019 - Springer | Model1 of ArsC with 3RDW is 1.5 , 1I9D is 2.2 , 1J9B is 2.2 , 2KOK is 3.0 In the case of ArsC, the ArsC C12S mutant ( PDB ID: 1S3C) from E. coli was used as the a confidence score of 0.9040, indicating a very high quality model, where an accurate modeled structure has a |
| 10 | 3eg4 | - | http://www.sciencedirect.com/science/article/pii/S0022283609004914 | The three-dimensional Structure of a mycobacterial DapD provides insights into DapD diversity and reveals unexpected particulars about the enzymatic mechanism | 2009 | L Schuldt, S Weyand, G Kefala, MS Weiss - Journal of molecular biology, 2009 - Elsevier | ... coli (PDB entry 3BXY), 7 Campylobacter jejuni (PDB entry 2RIJ, Joint Center for Structural Genomics, unpublished results), Enterococcus faecalis (PDB entry 3CJ8, K. Tan et al., unpublished results) and Brucella melitensis biovar abortus (PDB entry 3EG4, Seattle Structure ... |