We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4KNA | 2013 | 4 |
| 6AMZ | 2017 | 4 |
| 2M4Y | 2013 | 4 |
| 4WGJ | 2015 | 4 |
| 3OCF | 2010 | 4 |
| 4W65 | 2014 | 4 |
| 5W25 | 2017 | 4 |
| 4K6F | 2013 | 4 |
| 3K2C | 2009 | 4 |
| 3JVI | 2009 | 4 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3hwi | - | http://onlinelibrary.wiley.com/doi/10.1002/pro.260/full | Crystal structure of YnjE from Escherichia coli, a sulfurtransferase with three rhodanese domains | 2009 | P H?nzelmann, JU Dahl, J Kuper, A Urban? - Protein Science, 2009 - Wiley Online Library | ... The tandem-domain rhodaneses from Thermus thermophilus (PDB entry 1uar), Mycobacterium tuberculosis (PDB entry 3hwi), Azotobacter vinelandii (Av_RhdA, PDB entry 1e0c) and Bos taurus (Rhodbov, PDB entry 1boi) with Z-scores of ?30 and rms deviations of about 2.2 ? ... |
| 2 | 4gie | - | http://www.pnas.org/content/114/40/10648.short | Actin retrograde flow actively aligns and orients ligand-engaged integrins in focal adhesions | 2017 | V Swaminathan, JM Kalappurakkal- Proceedings of the, 2017 - National Acad Sciences | ... How could transmembrane receptors sense directional force? Cytoskeletal forces are thought to provide an ultrasensitive mechanism for triggering integrin activation by inducing structural transitions between inactive and active integrin conformations (11). ... |
| 3 | 3krb | - | https://febs.onlinelibrary.wiley.com/doi/abs/10.1111/febs.14667 | Crystal structure of yeast xylose reductase in complex with a novel NADPDTT adduct provides insights into substrate recognition and catalysis | 2018 | B Paidimuddala, SB Mohapatra, SN Gummadi- The FEBS, 2018 - Wiley Online Library | [20, 21] and Giardia lamblia (GlAR; PDB : 3KRB ) homologs [22]. The AKR fold is a namely, hAR bound to D-glyceraldehyde ( PDB : 3V36) and to glucose-6-phosphate ( PDB : 2ACQ) [15, 35] described the enzyme-glyceraldehyde interactions in detail, the structure shows that the |
| 4 | 3gp5 | - | http://www.jbc.org/content/285/27/21049.short | Structure and Activity of the Metal-independent Fructose-1, 6-bisphosphatase YK23 from Saccharomyces cerevisiae | 2010 | E Kuznetsova, L Xu, A Singer, G Brown, A Dong? - Journal of Biological Chemistry, 2010 - ASBMB | ... of YK23 was solved to 1.75-? resolution using selenomethionine-substituted protein and multiple wavelength anomalous dispersion (PDB code 3F3K ... 2a6p; Z-score 23.7; rms deviation 1.9 ?), the phosphoglyceromutase GpmA from Burkholderia pseudomallei (3gp5; Z-score ... |
| 5 | 6amz | - | https://www.sciencedirect.com/science/article/pii/S002251932030028X | Identification of potential therapeutic targets in Neisseria gonorrhoeae by an in-silico approach | 2020 | P Tanwer, SRR Kolora, A Babbar, D Saluja- Journal of Theoretical, 2020 - Elsevier | The obtained protein. pdb file was overlapped with the homologous protein whose crystal structure ( 6AMZ from Acinetobacter baumannii) was obtained from RCSB database (Berman et al., 2000). Both protein structures were overlapped using Pymol (Alexander et al., 2011) to |
| 6 | 3men | - | http://pubs.acs.org/doi/abs/10.1021/bi101859k | Structure of Prokaryotic Polyamine Deacetylase Reveals Evolutionary Functional Relationships with Eukaryotic Histone Deacetylases | 2011 | PM Lombardi, HD Angell, DA Whittington, EF Flynn? - Biochemistry, 2011 - ACS Publications | The recently solved X-ray crystal structure of the Burkholderia pseudomallei APAH dimer (PDB ID: 3MEN; 34% sequence identity with M. ramosa APAH) contains a 16-residue L2 loop insertion (A79−R101) between helices B2 and B3. |
| 7 | 3ngf | - | http://link.springer.com/article/10.1007/s13205-014-0274-1 | Structure-based function analysis of putative conserved proteins with isomerase activity from Haemophilus influenzae | 2014 | M Shahbaaz, F Ahmad, MI Hassan - 3 Biotech, 2014 - Springer | ... was used for structure- based function annotation and for predicting structural motifs associated ...by DALI server that compares the target structure with known structure submitted in PDB. Thesecondary structure elements are computed from atomic resolution protein structures of ... |
| 8 | 3men | - | http://www.sciencedirect.com/science/article/pii/S1093326315300668 | Homology modeling of parasite histone deacetylases to guide the structure-based design of selective inhibitors | 2015 | J Melesina, D Robaa, RJ Pierce, C Romier - Journal of Molecular , 2015 - Elsevier | ... Wizard (Schrdinger Inc.) by adding hydrogen atoms, defining the protonation states of residuesand minimising the structure to remove steric ... Number, Organism/protein name, Abbreviation,PDB ID. ... 10, Burkholderia pseudomallei acetylpolyamine aminohydrolase, BpAPAH, 3MEN ... |
| 9 | 5vm8 | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/pro.3305 | Crystal structure of the Legionella pneumophila Lpg2936 in complex with the cofactor SadenosylLmethionine reveals novel insights into the mechanism of RsmE | 2017 | N Pinotsis, G Waksman- Protein Science, 2017 - Wiley Online Library | RsmE ( PDB ID 4e8b),[13] from H. influenzae ( PDB ID: 1nxz and 1vhy)[14] and from N. gonorrhoeae ( PDB ID 5vm8 ) Structure based sequence alignment using the most similar structures from seven different bacteria species reveals (i) a highly conserved C-terminal part of |
| 10 | 4kna | - | http://www.jbc.org/content/early/2017/09/18/jbc.M117.801514.short | Mechanisms of recognition of A monomer, oligomer, and fibril by homologous antibodies | 2017 | J Zhao, R Nussinov, B Ma- Journal of Biological Chemistry, 2017 - ASBMB | ... To get structural insight into A recognition by crenezumab, we compare the ... Two possible conformers of the apo form of the crenezumab Fab structure were modeled based on the crystal structures of CreneFab apo ( pdb code: 5kmv) and CreneFab-A ( pdb code: 5kna ... |