We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7SBC | 2021 | 5 |
| 4XEU | 2015 | 5 |
| 3IEQ | 2009 | 5 |
| 4Q6U | 2014 | 5 |
| 5IFI | 2016 | 5 |
| 6E4E | 2018 | 5 |
| 6P81 | 2019 | 5 |
| 3NJB | 2010 | 5 |
| 5VE7 | 2017 | 5 |
| 6DA0 | 2018 | 5 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4eqy | - | https://www.mdpi.com/2218-273X/10/2/266 | Structure-Based Virtual Screening of Pseudomonas aeruginosa LpxA Inhibitors Using Pharmacophore-Based Approach | 2020 | BV Bhaskar, TMC Babu, A Rammohan, GY Zheng- Biomolecules, 2020 - mdpi.com | 1J2Z) [22], Leptospira interrogans ( PDB ID: 3HSQ) [23] and Burkholderia thailandensis ( PDB ID: 4EQY ) [24] were In this study, the PaLpxA structure was superimposed on LpxA orthologs from different bacterial Organism PDB ID Monomer A Monomer B RMSD () Pocket Size ( |
| 2 | 3o2e | - | https://febs.onlinelibrary.wiley.com/doi/abs/10.1111/febs.15447 | Phosphorylation status of BolA affects its role in transcription and biofilm development | 2021 | L Galego, S Barahona, CV Romo- The FEBS, 2021 - Wiley Online Library | NMR structure of mouse BolA1 ( PDB ID 1V60) and E. coli BolA ( PDB ID 2DHM) reveal a structure with similarity to nucleic acid binding proteins including a helix-turn [6]. MreB is a structural homologue of actin that is essential for cell elongation, maintenance of |
| 3 | 3rrp | - | https://www.sciencedirect.com/science/article/pii/S0141022918302370 | Enhancing the thermostability of fumarase C from Corynebacterium glutamicum via molecular modification | 2018 | L Lin, Y Wang, M Wu, L Zhu, L Yang, J Lin- Enzyme and microbial, 2018 - Elsevier | The modeled structure of cgFumC was completed through homology modeling with the Swiss-Model server by using the crystal structure of the fumarate hydratase Fum ( PDB ID: 3RRP ) from Mycobacterium abscessus as a template, which shares a 75.76% sequence |
| 4 | 4f2n | - | https://www.nature.com/articles/s41598-023-45448-x | Dual-target drugs against Leishmania donovani for potential novel therapeutics | 2023 | K Bora, M Sarma, SP Kanaujia, VK Dubey- Scientific Reports, 2023 - nature.com | For this study, the crystal structures of Leishmania major FeSODA ( PDB ID: 4F2N ) and ( PDB ID: 2JK6) were obtained from the PDB database 13,14 . The crystal structure of 4F2N was |
| 5 | 4f2n | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/ardp.201800299 | Antileismanial activity, mechanism of action study and molecular docking of 1, 4bis (substituted benzalhydrazino) phthalazines | 2019 | AH Romero, N Rodrguez, H Oviedo- Archiv der, 2019 - Wiley Online Library | candidate for further pharmacokinetic and in vivo experiments as antileishmanial agent, and as a platform for further structural optimization ... Representation of molecular docking of 1,4‐bis‐(substituted benzalhydrazino) phthalazine 3b on the superoxidedismutase active sites of Leishmania major (PDB code: 4F2N) |
| 6 | 3gvg | - | http://www.springerlink.com/index/C7W2222G6X226326.pdf | Triosephosphate isomerase: a highly evolved biocatalyst | 2010 | RK Wierenga, EG Kapetaniou, R Venkatesan - Cellular and molecular life Sciences, 2010 - Springer | ... 1AW2 M. marina No SO4 Dimer 2.65 20.0 21.9 3GVG M. tuberculosis No Dimer 1.55 14.5 16.9 1R2R O. cuniculus No Dimer 1.5 16.1 19.0 ... 3967 Page 8. Table 1 continued pdb code Source Mutant Active site ligand Oligomeric state Resolution (A? ) Rcryst (%) Rfree (%) ... |
| 7 | 4mei | 4nhf, 4o3v, 4kz1, 4lso, 4jf8 | https://link.springer.com/chapter/10.1007/978-3-319-75241-9_2 | Structural and Molecular Biology of Type IV Secretion Systems | 2017 | L Terradot, C Berg, G Waksman- Type IV Secretion in Gram-Negative, 2017 - Springer | 1.2 Composition of T4SSs. X-ray crystallography, nuclear magnetic resonance (NMR), and more recently electron microscopy have been successfully used to provide insights into the structure of T4SSs Plasmid or bacteria. PDB or EMDB ID 4KZ1,4JF8,4LSO, 4MEI ,4NHF m |
| 8 | 6q05 | - | https://www.sciencedirect.com/science/article/pii/S1093326320305672 | Exploring the intrinsic dynamics of SARS-CoV-2, SARS-CoV and MERS-CoV spike glycoprotein through normal mode analysis using anisotropic network | 2021 | S Majumder, D Chaudhuri, J Datta, K Giri- Journal of Molecular Graphics, 2021 - Elsevier | 2.1. Protein structure retrieval. All the X-ray crystal structures for SARS-CoV-2, SARS-CoV and MERS-CoV S proteins in the lying state were taken from protein data bank [21]. The corresponding PDB IDs are 6VXX, 5X58 and 6Q05 respectively [11,22,23] |
| 9 | 3p3a | 4lw8, 3hzu | https://onlinelibrary.wiley.com/doi/abs/10.1002/prot.25874 | Challenges and opportunities of automated proteinprotein docking: HDOCK server versus human predictions in CAPRI Rounds 3846 | 2020 | Y Yan, J He, Y Feng, P Lin, H Tao- Proteins: Structure, 2020 - Wiley Online Library | prediction of this dimer interface is expected. For T144, the TPC1 channel structures of mouse ( PDB ID: 6C9A) and Arabidopsis thaliana ( PDB ID: 5DQQ) were used as the templates to construct the human TPC2 channel structure ( PDB ID: 6NQ0). Despite the low sequence |
| 10 | 6nb6 | - | https://www.sciencedirect.com/science/article/pii/S0021925817484729 | SARS-CoV-2 (COVID-19) structural and evolutionary dynamicome: Insights into functional evolution and human genomics | 2020 | R Gupta, J Charron, CL Stenger, J Painter- Journal of Biological, 2020 - Elsevier | receptor structure -function. post-translational modification (PTM). COVID-19. severe acute respiratory coronavirus 2 (SARS-CoV-2) Their 2633-kb genome consists of positive-sense, single-stranded RNA, coding for nonstructural and structural proteins This protein complex model was built through the integration of PDB structures 6CRW, 6NB6, and 5X58 for the trimer of spike proteins with 6M17, |