We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7SOB | 2022 | 5 |
| 6PQH | 2019 | 5 |
| 3GQT | 2009 | 5 |
| 4NPC | 2013 | 5 |
| 3DMS | 2008 | 5 |
| 3LD9 | 2010 | 5 |
| 2LBB | 2011 | 5 |
| 7JXC | 2020 | 5 |
| 3MDX | 2010 | 5 |
| 4HWG | 2012 | 5 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3eg4 | - | http://www.sciencedirect.com/science/article/pii/S0022283609004914 | The three-dimensional Structure of a mycobacterial DapD provides insights into DapD diversity and reveals unexpected particulars about the enzymatic mechanism | 2009 | L Schuldt, S Weyand, G Kefala, MS Weiss - Journal of molecular biology, 2009 - Elsevier | ... coli (PDB entry 3BXY), 7 Campylobacter jejuni (PDB entry 2RIJ, Joint Center for Structural Genomics, unpublished results), Enterococcus faecalis (PDB entry 3CJ8, K. Tan et al., unpublished results) and Brucella melitensis biovar abortus (PDB entry 3EG4, Seattle Structure ... |
| 2 | 4egq | - | https://www.sciencedirect.com/science/article/pii/S0167732217360439 | Identification of natural inhibitors against Acinetobacter baumanniid-alanine-d-alanine ligase enzyme: A multi-spectrum in silico approach | 2018 | S Ahmad, S Raza, SW Abbasi, SS Azam- Journal of Molecular Liquids, 2018 - Elsevier | The protein after retrieval from PDB was subjected to a preparation phase, where only one 5), with minor effect on the overall structure baumannii), (3V4Z, Yersinia pestis), (4DGJ, Burkholderia xenovorans), (4EGO, Burkholderia ambifaria), ( 4EGQ , Burkholderia pseudomallei) |
| 3 | 4qfh | 4g7f, 4gie | https://www.mdpi.com/2218-273X/9/9/484 | Insights into Ergosterol Peroxide's Trypanocidal Activity | 2019 | T Meza-Menchaca, A Ramos-Ligonio- Biomolecules, 2019 - mdpi.com | \To identify potential Tc proteins that might directly interact with ergosterol peroxide, an inverse-docking screening was performed on a subset of Tc protein crystallography structures.. Table 1. The best matches between T. cruzi proteins and ergosterol peroxide in descending order of ∆G predictive value ... Dihydroorotate dehydrogenase 4QFH 3W1R −9.1 −11.17 6.407 |
| 4 | 3iew | 3k2x | https://pubs.acs.org/doi/abs/10.1021/acs.jcim.0c00877 | Benchmark Sets for Binding Hot Spot Identification in Fragment-Based Ligand Discovery | 2020 | AE Wakefield, C Yueh, D Beglov- Journal of Chemical, 2020 - ACS Publications | Binding hot spots are regions of proteins that, due to their potentially high contribution to the binding free energy, have high propensity to bind small molecules. We present benchmark sets for te... |
| 5 | 3ujh | - | https://nph.onlinelibrary.wiley.com/doi/abs/10.1111/nph.17368 | Engineering of the cytosolic form of phosphoglucose isomerase into chloroplasts improves plant photosynthesis and biomass | 2021 | F Gao, H Zhang, W Zhang, N Wang, S Zhang- New, 2021 - Wiley Online Library | in Shanghai, China. Diffraction data were processed by HKL2000 and the PGIs structure models ( PDB : 3UJH ). After cycles of auto model building (PHENIX) (Liebschner et al., 2019) and To investigate the structural basis for the dramatic activity difference between TaPGIc and |
| 6 | 3laa | - | http://onlinelibrary.wiley.com/doi/10.1111/j.1462-5822.2011.01711.x/full | Analysis of the BadA stalk from Bartonella henselae reveals domain‐specific and domain‐overlapping functions in the host cell infection process | 2012 | PO Kaiser, D Linke, H Schwarz, JC Leo… - Cellular …, 2012 - Wiley Online Library | ... The structures are the YadA head (PDB ID: 1PH9) of Y. enterocolitica (Nummelin et al., 2004),the BpaA head ... structural motifs matches the colouring of the schematic diagram in A. The depictedstructural motifs of 3LAA occur in the inverse order in the original structure to that ... |
| 7 | 3ecd | 3h7f | http://www.sciencedirect.com/science/article/pii/S0141813009002098 | Structural adaptation of serine hydroxymethyltransferase to low temperatures | 2010 | A Siglioccolo, F Bossa, S Pascarella - International journal of biological Macromolecules, 2010 - Elsevier | ... Table 5. List of representative structures of SHMT currently available in the Protein Data Bank. PDB id Resolution (Å) Biological source 3ECD 1.60 Burkholderia pseudomallei. ... |
| 8 | 6x79 | 7jv2 | https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0252571 | Molecular dynamics analysis of N-acetyl-D-glucosamine against specific SARS-CoV-2's pathogenicity factors | 2021 | Baysal, N Abdul Ghafoor, RS Silme, AN Ignatov- PloS one, 2021 - journals.plos.org | The 3' end of the genome encodes 4 major structural proteins, including the spike protein (S), the nucleocapsid protein structure of refusion SARS-CoV-2 S ectodomain trimer covalently stabilized in the closed conformation ( PDB : 6X79 ), and X-ray diffraction structure of SARS |
| 9 | 3d5t | 3doc | http://www.sciencedirect.com/science/article/pii/S0301462210002437 | 'Cold spots' in protein cold adaptation: Insights from normalized atomic displacement parameters (< i> B'</i>-factors) | 2010 | A Siglioccolo, R Gerace, S Pascarella - Biophysical chemistry, 2010 - Elsevier | ... Growth temperature of the microorganism sources of the selected proteins were taken from thedatabank DSMZ (http://www.dsmz.de/, Deutsche Sammlung von ... Family, Source a, Growth T (?C) b, Pdb ID c, Res. ... Burkholderia pseudomallei, 40, 3D5T, 2.51, 253/328 (77%), 2, 331. ... |
| 10 | 3p96 | - | https://www.mdpi.com/1420-3049/25/2/415 | Identification and Repurposing of Trisubstituted Harmine Derivatives as Novel Inhibitors of Mycobacterium tuberculosis Phosphoserine Phosphatase | 2020 | E Pierson, M Haufroid, TP Gosain, P Chopra, R Singh- Molecules, 2020 - mdpi.com | SerB2 model generated by homology modeling based on the crystal structure of Mycobacterium avium SerB (Protein Data Bank ( PDB ) entry 3P96 ) is in The docked structure of the best inhibitor, compound 124, is shown in Figure 4. Analysis of those structures shows that |