We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3HJA | 2009 | 5 |
| 6D9Y | 2018 | 5 |
| 3M4S | 2010 | 5 |
| 7R7N | 2021 | 5 |
| 2KHR | 2009 | 5 |
| 3M1X | 2010 | 5 |
| 4W65 | 2014 | 5 |
| 3TE8 | 2011 | 5 |
| 4JNQ | 2013 | 5 |
| 3EJ0 | 2008 | 5 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 7so9 | - | https://www.nature.com/articles/s41421-023-00535-1 | Comprehensive structural analysis reveals broad-spectrum neutralizing antibodies against SARS-CoV-2 Omicron variants | 2023 | X Chi, L Xia, G Zhang, X Chi, B Huang, Y Zhang- Cell Discovery, 2023 - nature.com | with multiple structures , we selected the subcomplex deposited earliest in the PDB database ID: 7SO9 ) were manually refined based on the focused-refined cryo-EM map. Each residue |
| 2 | 3dmo | - | http://www.sciencedirect.com/science/article/pii/S1047847709003463 | Structural and functional analyses of< i> Mycobacterium tuberculosis Rv3315c</i>-encoded metal-dependent homotetrameric cytidine deaminase | 2010 | ZA S?nchez-Quitian, CZ Schneider, RG Ducati? - Journal of structural Biology, 2010 - Elsevier | ... in the PDB (3IJF). Fig. 7A and B show two views of the canonical homotetrameric structure observed for CDAs from S. cerevisiae (1R5T), B. subtilis (1UX1, 1UWZ, 1UX0, 1JTK), Mus musculus (1ZAB, 2FR5, 2FR6), Bacillus anthracis (2D30), Burkholderia pseudomallei (3DMO), ... |
| 3 | 3m1x | - | http://www.sciencedirect.com/science/article/pii/S1046202315002078 | Protein structure prediction guided by crosslinking restraints–A systematic evaluation of the impact of the crosslinking spacer length | 2015 | T Hofmann, AW Fischer, J Meiler, S Kalkhof - Methods, 2015 - Elsevier | ... Based on the structure of calmodulin (PDB entry 2ksz) the average Cβ–Nz, Cβ–Cγ, Cβ–Cδ,Cβ–N H2 , and Cβ–S G distances ... Structure, Uniprot, Resolution [Å], Molecular weight [Da],Sequence length [aa], Lys portion [%], α-helix [%], β-sheet ... 3m1x, C4LXT9, 1.2, 15882, 138, 7, ... |
| 4 | 4z9n | - | https://link.springer.com/article/10.1007/s00253-018-9073-7 | Characterization of the caprolactam degradation pathway in Pseudomonas jessenii using mass spectrometry-based proteomics | 2018 | M Otzen, C Palacio, DB Janssen- Applied microbiology and biotechnology, 2018 - Springer | 4282 5 1154 Acyl-CoA dehydrogenase 42, Thermus thermophilus 1.3.99.2 2DVL 2532 28 1031 ABC transporter, amino acid binding protein 59, Brucella ovis 4Z9N 3504 39 1922 Serine protein kinase 77, E. coli 2.7.11.1 P0ACY5 |
| 5 | 3nfw | - | https://pubs.rsc.org/doi/c9se00523d | The oxygen reduction reaction catalyzed by Synechocystis sp. PCC 6803 flavodiiron proteins | 2019 | KA Brown, Z Guo, M Tokmina-Lukaszewska- Sustainable Energy &, 2019 - pubs.rsc.org | 3, 12 and 13) and provide more insights into the Flv structure , substrate reactivity and protein based on heuristics to maximize confidence, percentage identity and alignment coverage ( PDB IDs: 1VME for the oxidoreductase domain: 5ZC2, 55 3RH7, 4HX6, 56 3K87, 57 3NFW 58 |
| 6 | 6od8 | - | https://www.sciencedirect.com/science/article/pii/S0141813020347772 | Leishmanial aspartyl-tRNA synthetase: Biochemical, biophysical and structural insights | 2020 | GC Panigrahi, R Qureshi, P Jakkula, KA Kumar- International Journal of, 2020 - Elsevier | Furthermore, CD and intrinsic tryptophan fluorescence measurements showed the changes in structural conformation at varying pH, denaturants and ligands. The modelled LdaspRS structure presented all the specific characteristics of class II aaRSs, ... The three-dimensional structure of LdaspRS was predicted by homology modelling using Modeller 9.16 [22] with Leishmania major Friedlin aspartyl tRNA synthetase (PDB ID: 6OD8) as a template. |
| 7 | 3vab | - | http://www.jbc.org/content/291/18/9785.short | Dimerization of Bacterial Diaminopimelate Decarboxylase Is Essential for Catalysis | 2016 | MG Peverelli, TPS da Costa, N Kirby - Journal of Biological , 2016 - ASBMB | ... and 1TUF) (9), Aquifex aeolicus (PDB code 2P3E), and Brucella melitensis (PDB code 3VAB)show that ... both a dimer (PDB codes 1HKW and 1HKV) (7) and a tetramer (PDB code 2O0T ... arethe results of earlier studies aimed at characterizing the quaternary structure of DAPDC ... |
| 8 | 3r1j | - | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3765361/ | Protein Similarity Networks Reveal Relationships among Sequence, Structure, and Function within the Cupin Superfamily | 2013 | R Uberto, EW Moomaw - PLoS One, 2013 - journals.plos.org | File S1 Combined Supporting Information Files - Alpha-ketoglutarate-dependent taurine dioxygenase Mycobacterium avium 3r1j |
| 9 | 4mei | 4nhf, 4o3v, 4kz1, 4lso, 4jf8 | https://link.springer.com/chapter/10.1007/978-3-319-75241-9_2 | Structural and Molecular Biology of Type IV Secretion Systems | 2017 | L Terradot, C Berg, G Waksman- Type IV Secretion in Gram-Negative, 2017 - Springer | 1.2 Composition of T4SSs. X-ray crystallography, nuclear magnetic resonance (NMR), and more recently electron microscopy have been successfully used to provide insights into the structure of T4SSs Plasmid or bacteria. PDB or EMDB ID 4KZ1,4JF8,4LSO, 4MEI ,4NHF m |
| 10 | 4k73 | - | https://pubs.acs.org/doi/abs/10.1021/acsinfecdis.8b00244 | Structural Basis for the Interaction and Processing of -Lactam Antibiotics by l,d-Transpeptidase 3 (LdtMt3) from Mycobacterium tuberculosis | 2019 | GA Libreros-Ziga, C dos Santos Silva- ACS Infectious, 2019 - ACS Publications | Structural Basis for the Interaction and Processing of -Lactam Antibiotics by l,d-Transpeptidase 3 These structures revealed a fold and catalytic diad similar to those of other Ldts Mt The Ldt Mt3 faropenem structure indicated that faropenem is degraded after Cys-246 acylation The phases were obtained by molecular replacement with Phaser53 from CCP4 suite,54 adopting the PDB entries 4K73 and 5DU727 as models for LdtMt3 and LdtMt5 structures, respectively |