We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7JXC | 2020 | 5 |
| 7SH3 | 2021 | 5 |
| 3MDX | 2010 | 5 |
| 4L82 | 2013 | 5 |
| 4HWG | 2012 | 5 |
| 6DA0 | 2018 | 5 |
| 2LKY | 2011 | 5 |
| 2N3S | 2015 | 5 |
| 4DJT | 2012 | 5 |
| 4LGO | 2014 | 5 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3ek2 | - | http://www.jbc.org/content/289/23/15987.short | Rational Design of Broad Spectrum Antibacterial Activity Based on a Clinically Relevant Enoyl-Acyl Carrier Protein (ACP) Reductase Inhibitor | 2014 | J Schiebel, A Chang, S Shah, Y Lu, L Liu, P Pan - Journal of Biological Chemistry, 2014 - ASBMB | ... Molecular replacement was performed in Phaser using the PDB entry 3EK2 as a template. ... The structure factors and coordinates of the different FabI structures have been deposited in the ProteinData Bank with the PDB entry codes 4CUZ (saFabI-NADPH-PT173), 4CV1 ... |
| 2 | 3d5t | 3doc | http://www.sciencedirect.com/science/article/pii/S0301462210002437 | 'Cold spots' in protein cold adaptation: Insights from normalized atomic displacement parameters (< i> B'</i>-factors) | 2010 | A Siglioccolo, R Gerace, S Pascarella - Biophysical chemistry, 2010 - Elsevier | ... Growth temperature of the microorganism sources of the selected proteins were taken from thedatabank DSMZ (http://www.dsmz.de/, Deutsche Sammlung von ... Family, Source a, Growth T (?C) b, Pdb ID c, Res. ... Burkholderia pseudomallei, 40, 3D5T, 2.51, 253/328 (77%), 2, 331. ... |
| 3 | 3laa | - | http://onlinelibrary.wiley.com/doi/10.1111/j.1462-5822.2011.01711.x/full | Analysis of the BadA stalk from Bartonella henselae reveals domain‐specific and domain‐overlapping functions in the host cell infection process | 2012 | PO Kaiser, D Linke, H Schwarz, JC Leo… - Cellular …, 2012 - Wiley Online Library | ... The structures are the YadA head (PDB ID: 1PH9) of Y. enterocolitica (Nummelin et al., 2004),the BpaA head ... structural motifs matches the colouring of the schematic diagram in A. The depictedstructural motifs of 3LAA occur in the inverse order in the original structure to that ... |
| 4 | 5eo6 | 4wsh, 4exq | http://mmbr.asm.org/content/81/1/e00048-16.short | Prokaryotic Heme Biosynthesis: Multiple Pathways to a Common Essential Product | 2017 | HA Dailey, TA Dailey, S Gerdes, D Jahn… - Microbiology and …, 2017 - Am Soc Microbiol | ...the structures of CgdC from yeast (PDB accession number 1TLB), human (accession number 2AEX), Leishmania major (accession number 3DWR), Leishmania donovani (accession number 3EJO), Leishmania naiffi (accession number 3E8J), and Acinetobacter baumannii (accession number 5EO6) have been solved, with all of them revealing an unprecedented fold for the monomer of large seven-stranded antiparallel β-sheets covered on both sides by α-helices.. |
| 5 | 5vog | - | https://scripts.iucr.org/cgi-bin/paper?ba5306 | ALIXE: a phase-combination tool for fragment-based molecular replacement | 2020 | C Milln, E Jimnez, A Schuster- Section D: Structural, 2020 - scripts.iucr.org | 2.4.1. Hypothetical protein ( PDB entry 5vog ). The crystal structure of a hypothetical protein from Neisseria gonorrhoeae with bound ppGpp was downloaded from the PDB ( PDB entry 5vog ; Seattle Structural Genomics Center for Infectious Disease, unpublished work) |
| 6 | 3enk | - | http://bmcstructbiol.biomedcentral.com/articles/10.1186/1472-6807-10-1 | Molecular modeling of the reductase domain to elucidate the reaction mechanism of reduction of peptidyl thioester into its corresponding alcohol in non- | 2010 | B Manavalan, SK Murugapiran - BMC structural , 2010 - bmcstructbiol.biomedcentral.com | ... The structure of the VR (PDB code 2p4h; 310 residues) and a dTDP-glucose 4,6-dehydratase(PDB code 1r6d; 322 residues) showed ... In addition, we used 2p4h as the baseline point andsuperimposed it onto the PDB structures listed in Table 1. The root-mean-square ... 3enk. ... |
| 7 | 4wi1 | - | https://www.mdpi.com/1422-0067/21/11/3803 | Identification of Selective Novel Hits against Plasmodium falciparum Prolyl tRNA Synthetase Active Site and a Predicted Allosteric Site Using in silico Approaches | 2020 | DW Nyamai, Tastan Bishop- International Journal of Molecular, 2020 - mdpi.com | (B) 2D representation of (a) SANC184; (b) SANC257; (c) SANC264; (d) SANC456; (e) SANC622 (f) TCMDC-124506 ( PDB ID: 4WI1 ); (g) glyburide ( PDB ID: 5IFU SANC236 ligand was unstable during the 20 ns simulation with structure flips at 10, 30, 95, 160, and 180 ns of the |
| 8 | 3u0g | - | https://link.springer.com/article/10.1007/s00436-017-5563-2 | An in silico strategy for identification of novel drug targets against Plasmodium falciparum | 2017 | S Rout, NP Patra, RK Mahapatra - Parasitology Research, 2017 - Springer | ... structure of our target protein was constructed taking multiple templates into account, namely, 1WRV (chain B), 3U0G (chain A), 1IYE (chain A), and 5E25 (chain A). The structural similarity between first template ( PDB ID 1WRV) and the modeled structure is 0.548 ... |
| 9 | 6an0 | - | https://www.mdpi.com/2076-2607/8/5/732 | The Role of Gene Elongation in the Evolution of Histidine Biosynthetic Genes | 2020 | S Del Duca, S Chioccioli, A Vassallo, LM Castronovo- Microorganisms, 2020 - mdpi.com | 6AN0 Elizabethkingia anophelis Amino acid sequences from HisA/HisF, IGPD, and HDH, available in the PDB , were downloaded from UniProt [29], aligned using BioEdit [30] through the ClustalW tool [31], and the conservation of the secondary structure organization was |
| 10 | 3k9w | - | http://www.sciencedirect.com/science/article/pii/S0022283610009502 | Kinetic, Thermodynamic, and Structural Insight into the Mechanism of Phosphopantetheine Adenylyltransferase from< i> Mycobacterium tuberculosis</i> | 2010 | TJ Wubben, AD Mesecar - Journal of molecular biology, 2010 - Elsevier | ... 21 Enteroccoccus faecalis, 22 and Helicobacter pylori; 23 and Staphylococcus aureus in complex with 3'-phosphoadenosine 5'-phosphosulfate, 24 Burkholderia pseudomallei in complex with hydrolyzed dPCoA [Protein Data Bank (PDB) ID 3K9W; unpublished], and ... |