We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6AMZ | 2017 | 4 |
| 4OT8 | 2014 | 4 |
| 4ONY | 2014 | 4 |
| 4JGB | 2013 | 4 |
| 5UNB | 2017 | 4 |
| 3K2C | 2009 | 4 |
| 3OCF | 2010 | 4 |
| 3JVI | 2009 | 4 |
| 4F4F | 2012 | 4 |
| 4OHC | 2014 | 4 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5vm8 | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/pro.3305 | Crystal structure of the Legionella pneumophila Lpg2936 in complex with the cofactor SadenosylLmethionine reveals novel insights into the mechanism of RsmE | 2017 | N Pinotsis, G Waksman- Protein Science, 2017 - Wiley Online Library | RsmE ( PDB ID 4e8b),[13] from H. influenzae ( PDB ID: 1nxz and 1vhy)[14] and from N. gonorrhoeae ( PDB ID 5vm8 ) Structure based sequence alignment using the most similar structures from seven different bacteria species reveals (i) a highly conserved C-terminal part of |
| 2 | 3r4t | 4ffc | https://www.mdpi.com/1420-3049/23/5/1128 | Novel-Substituted Heterocyclic GABA Analogues. Enzymatic Activity against the GABA-AT Enzyme from Pseudomonas fluorescens and in Silico Molecular Modeling | 2018 | E Tovar-Gudio, J Guevara-Salazar, J Bahena-Herrera- Molecules, 2018 - mdpi.com | molecular docking studies to explain their inhibitory character based in different structural and electronic to the concept of molecular similarity, which states that molecules with similar structure will have Figure 6 shows the cavity of the GABA-AT ( PDB : 1SF2 from Escherichia coli |
| 3 | 5eks | - | https://www.nature.com/articles/s41589-020-0587-9 | Architecture and functional dynamics of the pentafunctional AROM complex | 2020 | HA Veraszt, M Logotheti, R Albrecht, A Leitner- Nature Chemical, 2020 - nature.com | 2: The architecture and structural characteristics of the AROM complex. figure2. a, Definition of color scheme and order of domains in the CtAROM sequence, with gray numbers according to the succession of reactions in the pathway. b, CtAROM crystal structure with active sites ... The resulting representative PDB structures are 1NVA, 1XAL, 3QBD and 5EKS, for the DHQS |
| 4 | 5viu | - | https://link.springer.com/article/10.1007/s12298-021-01023-0 | Identification and expression profiling of proline metabolizing genes in Arabidopsis thaliana and Oryza sativa to reveal their stress-specific transcript alteration | 2021 | S Arabia, MNA Shah, AA Sami, A Ghosh- Physiology and Molecular, 2021 - Springer | 2020) to stabilize the intracellular environment as well as the structures of proteins, membranes, and subcellular organelles (Verslues et al Data retrieval from Arabidopsis and Rice genome databases, and construction of gene structure and domain architecture |
| 5 | 3r4t | 4ffc | https://www.mdpi.com/1420-3049/23/11/2984 | QSAR and Molecular Docking Studies of the Inhibitory Activity of Novel Heterocyclic GABA Analogues over GABA-AT | 2018 | J Rodrguez-Lozada, E Tovar-Gudio- Molecules, 2018 - mdpi.com | We have previously reported the synthesis, in vitro and in silico activities of new GABA analogues as inhibitors of the GABA-AT enzyme from Pseudomonas fluorescens... To incorporate the prosthetic group (PLP) in the homology models an alignment employing a crystal structure that possessed the PLP was done (3r4t and 1ohw for the Pseudomonas and human models respectively). |
| 6 | 5i1f | - | https://www.jbc.org/article/S0021-9258(21)00156-3/abstract | Bacillus subtilis YngB contributes to wall teichoic acid glucosylation and glycolipid formation during anaerobic growth | 2021 | CH Wu, J Rismondo, RML Morgan, Y Shen- Journal of Biological, 2021 - ASBMB | Section of Structural and Synthetic Biology, Department of Infectious Disease, Imperial College London, London, United Kingdom The crystal structure of YngB revealed that the protein has the typical fold and all necessary active site features of a functional UGPase |
| 7 | 4f2n | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/ardp.201800299 | Antileismanial activity, mechanism of action study and molecular docking of 1, 4bis (substituted benzalhydrazino) phthalazines | 2019 | AH Romero, N Rodrguez, H Oviedo- Archiv der, 2019 - Wiley Online Library | candidate for further pharmacokinetic and in vivo experiments as antileishmanial agent, and as a platform for further structural optimization ... Representation of molecular docking of 1,4‐bis‐(substituted benzalhydrazino) phthalazine 3b on the superoxidedismutase active sites of Leishmania major (PDB code: 4F2N) |
| 8 | 3ek2 | - | http://www.jbc.org/content/289/23/15987.short | Rational Design of Broad Spectrum Antibacterial Activity Based on a Clinically Relevant Enoyl-Acyl Carrier Protein (ACP) Reductase Inhibitor | 2014 | J Schiebel, A Chang, S Shah, Y Lu, L Liu, P Pan - Journal of Biological Chemistry, 2014 - ASBMB | ... Molecular replacement was performed in Phaser using the PDB entry 3EK2 as a template. ... The structure factors and coordinates of the different FabI structures have been deposited in the ProteinData Bank with the PDB entry codes 4CUZ (saFabI-NADPH-PT173), 4CV1 ... |
| 9 | 3rd5 | - | http://www.jbc.org/content/290/52/30728.short | Pleiotropic Functions of Tumor Suppressor WWOX in Normal and Cancer Cells | 2015 | M Abu-Remaileh, E Joy-Dodson - Journal of Biological , 2015 - ASBMB | ... B, a structural model of the SDR region (generated by the RosettaCM protocol as implemented by the Robetta server (78), starting from PDB ID 3rd5 (58) as a template structure) shows an extended central β sheet formed by Rossmann folds. ... |
| 10 | 3laa | - | http://onlinelibrary.wiley.com/doi/10.1111/j.1462-5822.2011.01711.x/full | Analysis of the BadA stalk from Bartonella henselae reveals domain‐specific and domain‐overlapping functions in the host cell infection process | 2012 | PO Kaiser, D Linke, H Schwarz, JC Leo… - Cellular …, 2012 - Wiley Online Library | ... The structures are the YadA head (PDB ID: 1PH9) of Y. enterocolitica (Nummelin et al., 2004),the BpaA head ... structural motifs matches the colouring of the schematic diagram in A. The depictedstructural motifs of 3LAA occur in the inverse order in the original structure to that ... |