We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4DUT | 2012 | 5 |
| 3UK1 | 2011 | 5 |
| 3QUV | 2011 | 5 |
| 4DGQ | 2012 | 5 |
| 4ED4 | 2012 | 5 |
| 3U0A | 2011 | 5 |
| 4J07 | 2013 | 5 |
| 7R7N | 2021 | 5 |
| 3GW8 | 2009 | 4 |
| 3SX2 | 2011 | 4 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3gka | 3r20, 4die, 3nxs, 3tk1, 4kam, 3md0 | http://pubs.acs.org/doi/abs/10.1021/acs.jmedchem.6b00078 | Impact of Binding Site Comparisons on Medicinal Chemistry and Rational Molecular Design | 2016 | C Ehrt, T Brinkjost, O Koch - Journal of medicinal chemistry, 2016 - ACS Publications | ... of 3D structures of proteins and protein ligand complexes is one prerequisite for rational structure-based drug design that deals with the utilization of these structural data to ... Figure 1. PDB statistics on the number of released PDB entries (blue bars) and the number of new ... |
| 2 | 7k43 | - | https://www.sciencedirect.com/science/article/pii/S2211124722005344 | Structures of Omicron spike complexes and implications for neutralizing antibody development | 2022 | H Guo, Y Gao, T Li, T Li, Y Lu, L Zheng, Y Liu, T Yang- Cell reports, 2022 - Elsevier | The recently reported structural model PDB entry 7T9K (Mannar et al., 2022) was used as an initial template for model building of the Omicron Spike trimer and ACE2. PDB entry 7K43 |
| 3 | 3u03 | - | http://www.hindawi.com/journals/ipid/2012/843509/abs/ | Pyoverdine, the Major Siderophore in Pseudomonas aeruginosa, Evades NGAL Recognition | 2012 | ME Peek, A Bhatnagar, NA McCarty? - Interdisciplinary Perspectives on Infectious Diseases, 2012 - hindawi.com | ... Recently, Strong and coworkers crystallized NGAL bound to pyochelin (PDB 3U03, deposited at the RCSB protein data bank) and the crystal structure clearly shows that pyochelin docks inside the calyx of NGAL but without binding avidly. ... |
| 4 | 5vmt | 3hja | https://www.sciencedirect.com/science/article/pii/S0882401018316140 | Crystal structure of GAPDH of Streptococcus agalactiae and characterization of its interaction with extracellular matrix molecules | 2018 | R Nagarajan, S Sankar, K Ponnuraj- Microbial pathogenesis, 2018 - Elsevier | S1). The protein BLAST against Protein Data Bank ( PDB ) led to 97 hits with recently determined 71% and 69% sequence identity with S. pneumoniae (5M6D), Nessiera gonorrhea ( 5VMT ) and S to mixed-holo structure (highest resolution of 1.36 ), the present structure (Apo, 2.6 |
| 5 | 5koi | - | https://www.mdpi.com/2077-0375/13/6/568 | The Alternating Access Mechanism in Mammalian Multidrug Resistance Transporters and Their Bacterial Homologs | 2023 | SA Badiee, UH Isu, E Khodadadi, M Moradi- Membranes, 2023 - mdpi.com | By exploring the structural and functional features of PDB files for each protein by resolution, starting with higher-resolution structures and progressing to lower-resolution structures Table 1. Available PDB files for MRP1, Pgp, Sav1866, and MsbA transporter proteins. ... 5KOI [59] 3.85 Å X-ray |
| 6 | 4lgv | - | https://www.sciencedirect.com/science/article/pii/S0006291X21003016 | Structural basis for substrate recognition of glucose-6-phosphate dehydrogenase from Kluyveromyces lactis | 2021 | HH Vu, C Jin, JH Chang- Biochemical and Biophysical Research, 2021 - Elsevier | The overall structure of Kluyveromyces lactis G6PD (cyan), Homo sapiens G6PD ( PDB code, 2BHL; red), Trypanosoma cruzi code, 6D23; yellow), Leuconostoc mesenteroides G6PD ( PDB code, 1DPG; purple), and Mycobacterium avium G6PD ( PDB code, 4LGV ; green) |
| 7 | 3qh4 | 3s4k | http://www.sciencedirect.com/science/article/pii/S1286457912002110 | Cytosolic lipid inclusions formed during infection by viral and bacterial pathogens | 2012 | M Stehr, AA Elamin, M Singh - Microbes and Infection, 2012 - Elsevier | ... Furthermore the three-dimensional structures of the esterases Rv0045c (PDB 3P2M) [48], Rv1847 (PDB 3S4K), and LipW (3QH4) from M. tuberculosis have been determined, but unfortunately it is not known whether these enzymes are involved in TAG hydrolysis. 5.5. ... |
| 8 | 3l56 | - | https://www.nature.com/articles/s41598-017-11625-y | Characterization of influenza A viruses with polymorphism in PB2 residues 701 and 702 | 2017 | AWH Chin, NKC Leong, JM Nicholls, LLM Poon- Scientific Reports, 2017 - nature.com | Correlation between the structural predictions and the polymerase activities in 293T cells at 37 C. In order to anticipate the effect of PB2-701 and 702 mutations on surface charge distributions, protein models of PB2-701 and 702 mutants ( PDB ID: 3CW4, 3L56 and 2GMO) were |
| 9 | 3k9w | - | http://www.sciencedirect.com/science/article/pii/S0022283610009502 | Kinetic, Thermodynamic, and Structural Insight into the Mechanism of Phosphopantetheine Adenylyltransferase from< i> Mycobacterium tuberculosis</i> | 2010 | TJ Wubben, AD Mesecar - Journal of molecular biology, 2010 - Elsevier | ... 21 Enteroccoccus faecalis, 22 and Helicobacter pylori; 23 and Staphylococcus aureus in complex with 3'-phosphoadenosine 5'-phosphosulfate, 24 Burkholderia pseudomallei in complex with hydrolyzed dPCoA [Protein Data Bank (PDB) ID 3K9W; unpublished], and ... |
| 10 | 3ecd | 3h7f | http://www.sciencedirect.com/science/article/pii/S0141813009002098 | Structural adaptation of serine hydroxymethyltransferase to low temperatures | 2010 | A Siglioccolo, F Bossa, S Pascarella - International journal of biological Macromolecules, 2010 - Elsevier | ... Table 5. List of representative structures of SHMT currently available in the Protein Data Bank. PDB id Resolution (Å) Biological source 3ECD 1.60 Burkholderia pseudomallei. ... |