We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4HJH | 2012 | 3 |
| 5VP5 | 2017 | 3 |
| 3OC9 | 2010 | 3 |
| 8SLG | 2023 | 3 |
| 5VNX | 2017 | 3 |
| 4K73 | 2013 | 3 |
| 8DUY | 2022 | 3 |
| 4XI8 | 2016 | 3 |
| 4WNY | 2014 | 3 |
| 3FS2 | 2009 | 3 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5ify | - | https://www.sciencedirect.com/science/article/pii/S007961071830172X | A structural and functional perspective on the enzymes of Mycobacterium tuberculosis involved in the L-rhamnose biosynthesis pathway | 2018 | DK Dhaked, MB Divya, L Guruprasad- Progress in Biophysics and, 2018 - Elsevier | Some representative crystal structures of RmlA-D were retrieved from PDB and were compared with the models constructed The structure superposition of some known RmlAs (PDB_IDs: 1FXO, 1IIM, 1H5T, 3PKP, 5IFY and 6B5E) revealed their highly similar structures |
| 2 | 5u9p | - | https://www.sciencedirect.com/science/article/pii/S0022286023007160 | Synthesis, crystallographic and spectroscopic investigation, chemical reactivity, hyperpolarizabilities and in silico molecular docking study of (Z)-2N-(tert | 2023 | FZ Boudjenane, F Triki-Baara, N Boukabcha- of Molecular Structure, 2023 - Elsevier | In Table 9, binding affinities for various poses in the 5U9P inhibitor of the investigated ligand between the molecule and the residues of the proteins 5U9P , 4HP8, 4Z9X, 1VL8, 4IBO and |
| 3 | 4em6 | - | https://www.sciencedirect.com/science/article/pii/S0378874119324778 | Metabolomics coupled with SystemsDock reveal the protective effect and the potential active components of Naozhenning granule against traumatic brain injury | 2020 | J Cao, Y Duan, Y Liu, H Liu, C Wei, J Wang- Journal of, 2020 - Elsevier | Orthogonal projection to latent structure -discriminate analysis (OPLS-DA) was also applied to maximize the Compounds, Docking score(> 6.0), Proportion of protein(%), PDB entry, Source 47.2, 4JYU, 4BBE, 1GJO, 3GJS, 4UI1, 2OOW, 4JC1, 5XSR, 1X9D, 6EYI, 4EM6 , 1TJJ, 2OC2 |
| 4 | 3pfd | - | https://www.sciencedirect.com/science/article/pii/S0141022918305313 | Site-directed mutation to improve the enzymatic activity of 5-carboxy-2-pentenoyl-CoA reductase for enhancing adipic acid biosynthesis | 2019 | J Yang, Y Lu, Y Zhao, Z Bai, Z Ma, Y Deng- Enzyme and Microbial, 2019 - Elsevier | 3PFD was the PDB ID of the template. Therefore, we used 3PFD as the template to build the homology model of Tfu_1647 protein using DS 2017R2 [17] We then used the Deriding-like force field in DS 2017R2 to optimize the structure to ensure that we produced a |
| 5 | 5vnx | 5jay | https://www.nature.com/articles/s41598-018-32905-1 | Riemerella anatipestifer AS87_RS09170 gene is responsible for biotin synthesis, bacterial morphology and virulence | 2018 | X Ren, X Wang, H Shi, X Zhang, Z Chen, KK Malhi- Scientific reports, 2018 - nature.com | 1DJE [30.2% identity]), Burkholderia multivorans ( PDB accession no. 5VNX [28.6% identity]) and Mycobacterium smegmatis ( PDB accession no. 3WY7 [29.9% identity]) 6). WT Yb2 cells were integral with clear structures , and few were undergoing division |
| 6 | 6xdh | - | https://www.cell.com/structure/pdf/S0969-2126(22)00495-6.pdf | Room-temperature structural studies of SARS-CoV-2 protein NendoU with an X-ray free-electron laser | 2023 | RJ Jernigan, D Logeswaran, D Doppler, N Nagaratnam- Structure, 2023 - cell.com | using the crystal structure of NendoU PDB entry 6XDH as the search model (Dranow et al., unpublished results) with all solvent and ligand atoms removed. The structure was refined |
| 7 | 3gvh | - | https://scripts.iucr.org/cgi-bin/paper?rf5009 | Conformational changes on substrate binding revealed by structures of Methylobacterium extorquens malate dehydrogenase | 2018 | JM Gonzlez, R Marti-Arbona, JCH Chen- Section F: Structural, 2018 - scripts.iucr.org | Data-collection and quality statistics are summarized in Table 3. 2.6. Structure solution and refinement The malate/lactate dehydrogenase from Brucella melitensis ( PDB entry 3gvh ; Seattle Structural Genomics Center for Infectious Disease, unpublished |
| 8 | 3ndn | - | http://pubs.acs.org/doi/abs/10.1021/bi201090n | Characterization of the Side-Chain Hydroxyl Moieties of Residues Y56, Y111, Y238, Y338, and S339 as Determinants of Specificity in E. coli Cystathionine beta-Lyase | 2011 | PH Lodha, SM Aitken - Biochemistry, 2011 - ACS Publications | ... figure Scheme 2. Observed Contacts of the PLP-AVG External Aldimine Active Site of eCBL a. a The dotted lines represent putative hydrogen bond distances of ?3.3 ? between heteroatoms. The image was constructed using ChemDraw and PDB entry 1CL2.(3). ... |
| 9 | 6nb8 | - | https://www.preprints.org/manuscript/202005.0270 | Use of Isoelectric Point for Fast Identification of Anti-SARS CoV-2 Coronavirus Proteins | 2020 | K Mallik - 2020 - preprints.org | If we follow the radial structure of the SARS CoV-2 virion, a gradual fall the in the pI values is 6NB8 (+) Human S230 antigen-binding fragment light chain 6.046 to make anti-viral drugs for SARS CoV-2. From the pI consideration, application of human Interferon- ( PDB ID 1AU1 |
| 10 | 2kz0 | 2mcq | http://www.jbc.org/content/289/35/24588.short | Structural and spectroscopic insights into BolA-glutaredoxin complexes | 2014 | T Roret, P Tsan, J Couturier, B Zhang - Journal of Biological Chemistry, 2014 - ASBMB | ... and the AtGrxS14-BolA2 apo-heterodimer model (2MMA) are available at the Research Collaboratory for Structural Bioinformatics (RCSB) Protein Data Bank. ... Accordingly, in Ehrlichia chaffeensis and Rickettsia prowazekii BolA structures (PDB entry 2KZ0 and 2MCQ ... |