We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5BNZ | 2015 | 4 |
| 4WBS | 2014 | 4 |
| 3U0I | 2011 | 4 |
| 3UPT | 2011 | 4 |
| 3UJH | 2011 | 4 |
| 3NGJ | 2010 | 4 |
| 4K6F | 2013 | 4 |
| 4Q6U | 2014 | 4 |
| 5UNB | 2017 | 4 |
| 3N5O | 2010 | 4 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3gmt | - | http://onlinelibrary.wiley.com/doi/10.1002/prot.22995/full | Identification of functional motions in the adenylate kinase (ADK) protein family by computational hybrid approaches | 2011 | D Armenta-Medina, E P?rez-Rueda? - Proteins: Structure, Function, and Bioinformatics, 2011 - Wiley Online Library | ... PDB ID, Organism, Resolution ?, Chain, %ID. 4ake, Escherichia coli, 2.20, A, 100. 3be4, Cryptosporidium parvum, 1.60, A, 45. 3fb4, Marinibacillus marinus, 2.00, A, 49. 3gmt, Burkholderia pseudomallei, 2.10, B, 66. 2c9y, Homo sapiens, 2.10, A, 49. 1ak2, Bos taurus, 1.92, A, 48. ... |
| 2 | 5j92 | - | https://sfamjournals.onlinelibrary.wiley.com/doi/abs/10.1111/1462-2920.14847 | Preferential catabolism of the (S)enantiomer of the herbicide napropamide mediated by the enantioselective amidohydrolase SnaH and the dioxygenase Snpd in | 2019 | J Huang, D Chen, J Jiang- Environmental microbiology, 2019 - Wiley Online Library | molecular docking. A homology model of Snpd was built based on chain A of the 5J92 template (sharing 39% identity with Snpd; PDB code; resolution: 1.95 ). A Snpd- KG-FeO complex structure was established in a similar manner as SnaH-Zn-H2O. The |
| 3 | 7lxw | 7lxx, 7ly0, 7soa, 7sof, 7ly3 | https://www.cell.com/cell-reports/pdf/S2211-1247(22)01868-X.pdf | Structural analysis of receptor engagement and antigenic drift within the BA. 2 spike protein | 2023 | JW Saville, D Mannar, X Zhu, AM Berezuk, S Cholak- Cell Reports, 2023 - cell.com | Cryo-EM structures of the BA.2 S-human ACE2 complex and of the extensively mutated BA.2 Our analysis reveals structural mechanisms underlying the antigenic drift in the rapidly |
| 4 | 5if3 | - | https://www.sciencedirect.com/science/article/pii/S1369703X18301530 | Semi-rational engineering of carbonyl reductase YueD for efficient biosynthesis of halogenated alcohols with in situ cofactor regeneration | 2018 | M Naeem, AU Rehman, B Shen, L Ye, H Yu- Biochemical Engineering, 2018 - Elsevier | Modeller 9.12 package on the basis of the crystal structure of a short-chain dehydrogenase/ reductase SDR ( PDB ID: 5if3 ) from Burkholderia amino acid residues for site directed mutagenesis, docking of the model substrate 3-bromoacetophenone into the structure of YueD |
| 5 | 3jvh | 3u04, 3ke1, 3k14, 3ikf | http://pubs.acs.org/doi/abs/10.1021/ci5004152 | Toward On-The-Fly Quantum Mechanical/Molecular Mechanical (QM/MM) Docking: Development and Benchmark of a Scoring Function | 2014 | P Chaskar, V Zoete, UF Röhrig - Journal of chemical information …, 2014 - ACS Publications | ... Quality of the structure: resolution <2.5 Å, DPI <0.5 Å, ligand without missing atoms and ... of theligands, we extracted the respective coordinates from the Protein Databank (PDB) file, added ...Protonation states were determined based on pK a values and structural data for some ... |
| 6 | 5vn4 | - | https://www.nature.com/articles/s41598-021-91747-6 | Acyclic nucleoside phosphonates with adenine nucleobase inhibit Trypanosoma brucei adenine phosphoribosyltransferase in vitro | 2021 | E Doleelov, T Klejch, P paek, M Slapnikov- Scientific Reports, 2021 - nature.com | Acyclic nucleoside phosphonates (ANPs) represent a group of compounds whose biological activity is based on their structural resemblance to the natural nucleotides 8,9 . Their flexibility enables them to adopt a conformation suitable for the interaction with the active site ... To assess the probable binding modes of the most potent inhibitors, docking calculations were performed. Since T. brucei APRT1 has been slightly explored so far, the only experimental structure that is available for this enzyme |
| 7 | 3i3r | - | https://scripts.iucr.org/cgi-bin/paper?ud5007 | Crystal structures of the closed form of Mycobacterium tuberculosis dihydrofolate reductase in complex with dihydrofolate and antifolates | 2019 | JA Ribeiro, SM Chavez-Pacheco- Section D: Structural, 2019 - scripts.iucr.org | mode and protein conformation, we solved the structure of the MtDHFRNADPHDIA ternary complex and compared it with the structure of the of MtDHFRNADPHPMX (yellow) and the B. bovis DHFR domain in complex with NADPH and PMX ( PDB entry 3i3r ; Begley et |
| 8 | 3urr | - | https://journals.asm.org/doi/abs/10.1128/jb.00023-23 | All dacs in a row: domain architectures of bacterial and archaeal diadenylate cyclases | 2023 | MY Galperin- Journal of Bacteriology, 2023 - Am Soc Microbiol | The search of the AlphaFold-predicted structure of DACNG using Dali (90) does not show any closely related structures in the PDB . This domain can also be found in a stand-alone ... PTS_EIIA_2 PF00359 139 3URR |
| 9 | 5j3b | - | https://www.sciencedirect.com/science/article/pii/S0969212620303737 | Structural Basis for Toxin Inhibition in the VapXD Toxin-Antitoxin System | 2020 | MB Bertelsen, M Senissar, MH Nielsen, F Bisiak- Structure, 2020 - Elsevier | Here, we provide structural insights into the architecture of the intact VapXD TA complex and toxin residues missing in each chain likely due to flexibility (Figure S1A). The structure consists of PDB Entry, VapXD (Selenomethionine) 6ZN8, VapD (Wild Type) 6ZI0, VapD (D7N) 6ZI1... (B) Structure of the Acinetobacter baumannii EF-P OB fold with conserved secondary structure in gold (PDB: 5J3B, left) and corresponding topology (right). |
| 10 | 4f4f | 3v7n | https://link.springer.com/article/10.1007/s11030-020-10129-8 | Modeling and simulation study to identify threonine synthase as possible drug target in Leishmania major | 2020 | RJ Meshram, KT Bagul, SU Aouti, AM Shirsath- Molecular Diversity, 2020 - Springer | conformational changes. Moreover, we address some important structural and dynamic interactions in the PLP binding region of TS that are in good agreement with previously speculated crystallographic estimations. Additionally |