We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4OT8 | 2014 | 4 |
| 4N5F | 2013 | 4 |
| 4ONY | 2014 | 4 |
| 6UYN | 2020 | 4 |
| 5V0T | 2017 | 4 |
| 4MAQ | 2013 | 4 |
| 4M0J | 2013 | 4 |
| 7KDS | 2020 | 4 |
| 4M9A | 2013 | 4 |
| 4WBS | 2014 | 4 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5vxt | - | https://www.cell.com/cell-reports/fulltext/S2211-1247(24)01353-6 | Biochemical and structural characterization of enzymes in the 4-hydroxybenzoate catabolic pathway of lignin-degrading white-rot fungi | 2024 | E Kuatsjah, A Schwartz, M Zahn, K Tornesakis- Cell Reports, 2024 - cell.com | Another close structural homolog is a catechol 1,2-dioxygenase from the bacterium Burkholderia ambifaria with bound catechol ( PDB : 5VXT ) with 25% sequence identity with the fungal |
| 2 | 3tcq | - | https://link.springer.com/article/10.1007/s00894-021-04682-8 | Targeting ebola virus VP40 protein through novel inhibitors: exploring the structural and dynamic perspectives on molecular landscapes | 2021 | S Khan, Z Fakhar, A Ahmad- Journal of Molecular Modeling, 2021 - Springer | of novel antiviral drugs. Computational methods. Structural modelling. The X-ray crystallographic structure of VP40 protein ( PDB Code: 3TCQ ) [12] was retrieved from the Protein Data Bank (www.rcsb.org). The structure was prepared |
| 3 | 4gie | - | http://www.pnas.org/content/114/40/10648.short | Actin retrograde flow actively aligns and orients ligand-engaged integrins in focal adhesions | 2017 | V Swaminathan, JM Kalappurakkal- Proceedings of the, 2017 - National Acad Sciences | ... How could transmembrane receptors sense directional force? Cytoskeletal forces are thought to provide an ultrasensitive mechanism for triggering integrin activation by inducing structural transitions between inactive and active integrin conformations (11). ... |
| 4 | 4kna | - | http://www.jbc.org/content/early/2017/09/18/jbc.M117.801514.short | Mechanisms of recognition of A monomer, oligomer, and fibril by homologous antibodies | 2017 | J Zhao, R Nussinov, B Ma- Journal of Biological Chemistry, 2017 - ASBMB | ... To get structural insight into A recognition by crenezumab, we compare the ... Two possible conformers of the apo form of the crenezumab Fab structure were modeled based on the crystal structures of CreneFab apo ( pdb code: 5kmv) and CreneFab-A ( pdb code: 5kna ... |
| 5 | 3hwi | - | http://onlinelibrary.wiley.com/doi/10.1002/pro.260/full | Crystal structure of YnjE from Escherichia coli, a sulfurtransferase with three rhodanese domains | 2009 | P H?nzelmann, JU Dahl, J Kuper, A Urban? - Protein Science, 2009 - Wiley Online Library | ... The tandem-domain rhodaneses from Thermus thermophilus (PDB entry 1uar), Mycobacterium tuberculosis (PDB entry 3hwi), Azotobacter vinelandii (Av_RhdA, PDB entry 1e0c) and Bos taurus (Rhodbov, PDB entry 1boi) with Z-scores of ?30 and rms deviations of about 2.2 ? ... |
| 6 | 3gp5 | - | http://www.jbc.org/content/285/27/21049.short | Structure and Activity of the Metal-independent Fructose-1, 6-bisphosphatase YK23 from Saccharomyces cerevisiae | 2010 | E Kuznetsova, L Xu, A Singer, G Brown, A Dong? - Journal of Biological Chemistry, 2010 - ASBMB | ... of YK23 was solved to 1.75-? resolution using selenomethionine-substituted protein and multiple wavelength anomalous dispersion (PDB code 3F3K ... 2a6p; Z-score 23.7; rms deviation 1.9 ?), the phosphoglyceromutase GpmA from Burkholderia pseudomallei (3gp5; Z-score ... |
| 7 | 6blj | - | https://www.mdpi.com/2073-4425/9/12/612 | Acceptor Stem Differences Contribute to Species-Specific Use of Yeast and Human tRNASer | 2018 | MD Berg, J Genereaux, Y Zhu, S Mian, GB Gloor- Genes, 2018 - mdpi.com | sapiens (4L87; [46]), Naegleria fowleri ( 6BLJ ), and Thermus thermophilus (1SET; [47]) from the Protein Data Bank were used to construct a structural alignment. ASN.1 files for each structure were obtained from the Molecular Modeling Database, and the structures were aligned |
| 8 | 3men | - | http://www.sciencedirect.com/science/article/pii/S1093326315300668 | Homology modeling of parasite histone deacetylases to guide the structure-based design of selective inhibitors | 2015 | J Melesina, D Robaa, RJ Pierce, C Romier - Journal of Molecular , 2015 - Elsevier | ... Wizard (Schrdinger Inc.) by adding hydrogen atoms, defining the protonation states of residuesand minimising the structure to remove steric ... Number, Organism/protein name, Abbreviation,PDB ID. ... 10, Burkholderia pseudomallei acetylpolyamine aminohydrolase, BpAPAH, 3MEN ... |
| 9 | 3men | - | http://pubs.acs.org/doi/abs/10.1021/bi101859k | Structure of Prokaryotic Polyamine Deacetylase Reveals Evolutionary Functional Relationships with Eukaryotic Histone Deacetylases | 2011 | PM Lombardi, HD Angell, DA Whittington, EF Flynn? - Biochemistry, 2011 - ACS Publications | The recently solved X-ray crystal structure of the Burkholderia pseudomallei APAH dimer (PDB ID: 3MEN; 34% sequence identity with M. ramosa APAH) contains a 16-residue L2 loop insertion (A79−R101) between helices B2 and B3. |
| 10 | 4hjh | - | https://www.mdpi.com/1422-0067/21/24/9341 | Genomic Analysis of Natural Rough Brucella melitensis Rev. 1 Vaccine Strains: Identification and Characterization of Mutations in Key Genes Associated with | 2020 | D Kornspan, R Lubkovskaia, S Mathur- International journal of, 2020 - mdpi.com | through all homologs (Figure 2A). To evaluate the possible effect of the detected mutation on protein functionality, we conducted a structural analysis of the amino acid sequence of GST based on the solved 3D structure of this protein from Sinorhizobium meliloti ( PDB ID 4MDC) ... we conducted a structural analysis of the amino acid sequence of phosphomannomutase based on the solved 3D structure of its paralog phosphoglucomutase (PDB ID 4HJH, |