We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5UNB | 2017 | 4 |
| 4Q6U | 2014 | 4 |
| 3UQB | 2011 | 4 |
| 4P9A | 2014 | 4 |
| 4WXT | 2014 | 4 |
| 6MKE | 2018 | 3 |
| 6MYA | 2018 | 3 |
| 6CNZ | 2018 | 3 |
| 4WEC | 2014 | 3 |
| 3KNU | 2009 | 3 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 8dya | - | https://www.nature.com/articles/s41467-024-49656-5 | A broadly generalizable stabilization strategy for sarbecovirus fusion machinery vaccines | 2024 | J Lee, C Stewart, A Schfer, EM Leaf, YJ Park- Nature, 2024 - nature.com | (Right) SARS-CoV-2 S ( PDB 6VXX) colored by sequence conservation across multiple the C-44 cryoEM structure previously determined with splayed open apex 17 ( PDB 8DYA ). c Size- |
| 2 | 4hjh | - | https://www.mdpi.com/1422-0067/21/24/9341 | Genomic Analysis of Natural Rough Brucella melitensis Rev. 1 Vaccine Strains: Identification and Characterization of Mutations in Key Genes Associated with | 2020 | D Kornspan, R Lubkovskaia, S Mathur- International journal of, 2020 - mdpi.com | through all homologs (Figure 2A). To evaluate the possible effect of the detected mutation on protein functionality, we conducted a structural analysis of the amino acid sequence of GST based on the solved 3D structure of this protein from Sinorhizobium meliloti ( PDB ID 4MDC) ... we conducted a structural analysis of the amino acid sequence of phosphomannomutase based on the solved 3D structure of its paralog phosphoglucomutase (PDB ID 4HJH, |
| 3 | 3oks | - | http://onlinelibrary.wiley.com/doi/10.1111/febs.13293/full | Single active‐site mutants are sufficient to enhance serine: pyruvate α‐transaminase activity in an ω‐transaminase | 2015 | D Deszcz, P Affaticati, N Ladkau, A Gegel… - FEBS …, 2015 - Wiley Online Library | ... More distantly related ω-TAms identified in the structure alignments, such as ornithine-AT (PDBcode: 1OAT), 4-aminobutyrate-AT (PDB code: 3OKS and 1SFF), acetylornithine-AT (PDB code:2ORD), l-lysine-epsilon-AT (PDB code: 2CJG), β-phenylalanine-AT (PDB code ... |
| 4 | 3gp5 | - | http://www.sciencedirect.com/science/article/pii/S0020169314001042 | Vanadate in structural biology | 2014 | S Akabayov, B Akabayov - Inorganica Chimica Acta, 2014 - Elsevier | ... Protein data bank; Data mining; Protein-vanadate complex. ... Structures of biological macromolecules containing ligands with vanadium were downloaded from the Protein Databank (www.pdb.org ... PDB, ProteinOrganism, CLASS a, Geometry b, DNA/RNA c, Metal Ion d, TS e, Ligand ... |
| 5 | 6tys | - | https://www.nature.com/articles/s41467-024-48601-w | A potent Henipavirus cross-neutralizing antibody reveals a dynamic fusion-triggering pattern of the G-tetramer | 2024 | P Fan, M Sun, X Zhang, H Zhang, Y Liu, Y Yao- Nature, 2024 - nature.com | Top (a) and side (b) views of the crystal structure of the NiV BD G HD /1E5 Fab complex. G HD /EB2 ( PDB ID: 2VSM) and G HD /m102.3 ( PDB ID: 6CMI) structures ... Prediction of G-F interactions based on Discovery Studio The GHD (PDB ID: 2VSM) and sF (PDB ID: 6TYS) proteins were docked using the Dock Proteins protocol (ZDOCK) in Discovery Studio 4.5. |
| 6 | 3jst | - | http://www.jbc.org/content/early/2014/01/23/jbc.M113.531236.short | Structure and identification of a pterin dehydratase-like protein as a RuBisCO assembly factor in the alpha-carboxysome | 2014 | NM Wheatley, CD Sundberg, SD Gidaniyan? - Journal of Biological Chemistry 2014 - ASBMB | ... diagram. Coordinates and structure factors have been deposited with the PDB ID code 4LOW. ... carboxysome). Data deposition - Atomic coordinates and diffraction data for acRAF have been deposited in the PDB with ID 4LOW. ... |
| 7 | 4g6c | - | https://www.nature.com/articles/s41467-022-33180-5 | The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases | 2022 | S Luang, X Fernndez-Luengo, A Nin-Hill- Nature, 2022 - nature.com | In this context, our aim was to provide direct structural evidence Based on these structures , we evaluate the reactant and that of Bacteroides -glucosidase ( PDB 5JP0) harbours the Glc ... while a β-hexosaminidase from Burkholderia cenocepacia10 folds into a single-domain (α/β)8 sandwich structure. |
| 8 | 5ji5 | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8080978.3/ | Identifying potential drug targets and candidate drugs for COVID-19: biological networks and structural modeling approaches | 2021 | G Selvaraj, S Kaliamurthi, GH Peslherbe- F1000Research, 2021 - ncbi.nlm.nih.gov | Structural modeling approach to study host-SARS-CoV-2 proteins interaction and drug and similarity and with the highest resolution template automatically from PDB and then Then, the corresponding structures constructed by superimposing the modeled protein structure on to |
| 9 | 3uam | - | https://bmcresnotes.biomedcentral.com/articles/10.1186/s13104-017-2429-8 | The discovery of novel LPMO families with a new Hidden Markov model | 2017 | GP Voshol, E Vijgenboom - BMC Research , 2017 - bmcresnotes.biomedcentral.com | ... Q3JY22. 3UAM. nd. nd. AA10 (formerly CBM33). ... The structure of one of the AA10 LPMOs fromStreptomyces coelicolor A3(2) (PDB ID: 4OY7) [39], with the copper atom shown as a sphereand highly conserved residues labeled and shown as sticks. Genome mining for LPMOs. ... |
| 10 | 3cez | - | https://www.sciencedirect.com/science/article/pii/S0891584920311321 | On the functionality of a methionine sulfoxide reductase B from Trypanosoma cruzi | 2020 | DG Arias, MS Cabeza, ML Echarren- Free Radical Biology, 2020 - Elsevier | These enzymes can reduce specifically one or another of the isomers of MetSO (free and protein-bound). This redox modification could change the structure and function of many proteins, either concerned in redox or other metabolic pathways ... Models were based on the resolved structure of MSRB from Methanothermobacter thermautotrophicus (PDB 2K8D), Burkholderia pseudomallei (PDB 3CEZ), and Xanthomonas campestris (PDB 3HCI). |