We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8DUY | 2022 | 3 |
| 4EGF | 2012 | 3 |
| 6UYN | 2020 | 3 |
| 6BLJ | 2017 | 3 |
| 4DYW | 2012 | 3 |
| 8SLG | 2023 | 3 |
| 3EMJ | 2008 | 3 |
| 5VP5 | 2017 | 3 |
| 4DI0 | 2012 | 3 |
| 6U94 | 2019 | 3 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3s6l | 3o2e, 3oib, 3men, 3k9g, 3km3, 3p96, 3njb | https://scripts.iucr.org/cgi-bin/paper?ba5274 | Substructure determination using phase-retrieval techniques | 2018 | P Skubk- Acta Crystallographica Section D: Structural Biology, 2018 - scripts.iucr.org | determination by PRASA has been integrated into the CRANK2 pipeline for automated structure solution from 3fki, 3gyv, 3k9g, 3km3, 3lmt, 3lmu, 3men, 3njb, 3o2e, 3oib, 3p96, 3s6l , 4us7, 4xvz the authors who kindly provided SAD data sets or deposited Bijvoet pairs in the PDB |
| 2 | 2lwk | - | http://www.sciencedirect.com/science/article/pii/S0006349515011601 | Predicting 3D Structure, Flexibility, and Stability of RNA Hairpins in Monovalent and Divalent Ion Solutions | 2015 | YZ Shi, L Jin, FH Wang, XL Zhu, ZJ Tan - Biophysical journal, 2015 - Elsevier | TABLE 1 The 32 RNA Molecules for 3D Structure Prediction in This Work 26 2LWK ... |
| 3 | 6nb6 | 6nb7 | https://www.researchsquare.com/article/rs-33181/latest.pdf | Computational approach for the design of potential spike protein binding natural compounds in SARS-CoV2 | 2020 | A Basu, A Sarkar, U Maulik - 2020 - researchsquare.com | 2dd8:S, 2ghw:A, 1q4z:A, 1t7g:A, 1xjp:A, 5xlr:A, 5x58:A, 6nb6 :A, 6nb7 ASN 448 are also conserved in ve SARS CoV-2 spike protein PDB structures and changed in SARS-CoV 21. Guex, N., Peitsch, MC, Schwede, T. Automated comparative protein structure modeling with SWISS |
| 4 | 3s99 | - | http://mbio.asm.org/content/4/1/e00615-12.short | Evidence for an ABC-Type Riboflavin Transporter System in Pathogenic Spirochetes | 2013 | RK Deka, CA Brautigam, BA Biddy, WZ Liu? - mBio, 2013 - Am Soc Microbiol | ... bind a small molecule between its two lobes. An adenine-binding protein from Brucella melitensis (unpublished PDB accession code 3S99; RMSD = 1.8 ? over 260 comparable C ? atoms) is also structurally similar to TP0298. ... |
| 5 | 3ixc | - | https://link.springer.com/article/10.1007/s10534-019-00190-8 | Molecular structure of thermostable and zinc-ion-binding -class carbonic anhydrases | 2019 | W Wang, Y Zhang, L Wang, Q Jing, X Wang, X Xi- BioMetals, 2019 - Springer | are displayed as cartoon diagrams with different colors and are labelled with their respective PDB codes using -TtCA 169 , the 1011 loop is almost the same as 1V67, 1XHD, 2FKO, 3IXC , 4MFG, and However, in the structure of -TtCA 169 , half of the C-terminal -helix is |
| 6 | 2kwl | 2l4b, 2l3v | http://onlinelibrary.wiley.com/doi/10.1002/pro.2050/full | Acyl carrier protein structural classification and normal mode analysis | 2012 | DC Cantu, MJ Forrester, K Charov, PJ Reilly - Protein Science, 2012 - Wiley Online Library | ... the amino acid residues between two structures compared for calculations; PDB: Protein Data Bank; PKS: polyketide synthase; RMSD: root mean square deviation; ThYme: Thioester active ... Protein Data Bank (PDB) ACP1 structures 1T8K, 1X3O, 2EHS, 2EHT, and 2QNW, ACP5 ... |
| 7 | 3v8h | - | https://www.frontiersin.org/articles/10.3389/fcimb.2017.00266 | Inactivation of the thymidylate synthase thyA in non-typeable Haemophilus influenzae modulates antibiotic resistance and has a strong impact on its interplay | 2017 | I Rodrguez-Arce, S Mart, B Euba- Frontiers in cellular, 2017 - frontiersin.org | Antibacterial treatment with cotrimoxazol (TxS), a combination of trimethoprim and sulfamethoxazole, generates resistance by, among others, acquisition of thymidine auxotrophy associated with mutations in the thymidylate synthase gene thyA, which can modify the biology A prediction of ThyAH. influenzae tertiary structure, based on Burkholderia thailandensis ThyA protein (PDB: 3V8H), was generated by the automated modeling tool of the Swiss Model web service |
| 8 | 4f4f | 3v7n | https://link.springer.com/article/10.1007/s11030-020-10129-8 | Modeling and simulation study to identify threonine synthase as possible drug target in Leishmania major | 2020 | RJ Meshram, KT Bagul, SU Aouti, AM Shirsath- Molecular Diversity, 2020 - Springer | conformational changes. Moreover, we address some important structural and dynamic interactions in the PLP binding region of TS that are in good agreement with previously speculated crystallographic estimations. Additionally |
| 9 | 4dz6 | - | https://www.degruyter.com/view/journals/pac/89/5/article-p653.xml | How to name atoms in phosphates, polyphosphates, their derivatives and mimics, and transition state analogues for enzyme-catalysed phosphoryl transfer | 2017 | GM Blackburn, J Cherfils, GP Moss- Pure and Applied, 2017 - degruyter.com | Architecture and Design Arts Asian and Pacific Studies Business and Economics Chemistry Classical and Ancient Near Eastern Studies Computer Sciences Cultural Studies Engineering General Interest Geosciences History Industrial Chemistry Islamic and Middle Eastern |
| 10 | 4hec | - | http://www.sciencedirect.com/science/article/pii/S0969212614000744 | Structure and Function of RNase AS, a Polyadenylate-Specific Exoribonuclease Affecting Mycobacterial Virulence In Vivo | 2014 | M Romano, R van de Weerd, FCC Brouwer - Structure, 2014 - Elsevier | ... Structural features of the enzyme resemble those of an independently determined structure reported in the Protein Data Bank while our functional characterization was ongoing (PDB code 4HEC) (Abendroth et al., 2014). ... |