We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7KVY | 2020 | 3 |
| 3PY5 | 2010 | 3 |
| 3K5P | 2009 | 3 |
| 6BRL | 2018 | 3 |
| 4LVU | 2013 | 3 |
| 4LC3 | 2013 | 3 |
| 3OEC | 2010 | 3 |
| 7K4L | 2022 | 3 |
| 4LHR | 2013 | 3 |
| 4FI5 | 2012 | 3 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6cy1 | - | https://www.sciencedirect.com/science/article/pii/S0141813020353630 | Essential biochemical, biophysical and computational inputs on efficient functioning of Mycobacterium tuberculosis H37Rv FtsY | 2021 | MK Ekka, LS Meena- International Journal of Biological Macromolecules, 2021 - Elsevier | FtsY is comprised of helices, but this structural pattern was shown to change these ligands cause significant conformational change by variating the secondary structure to transduce GTP-binding proteins. SRP signal recognition particle. PDB protein data bank. fts filamentous |
| 2 | 3eoo | - | http://www.sciencedirect.com/science/article/pii/S0743731511001948 | Accelerating knowledge-based energy evaluation in protein structure modeling with Graphics Processing Units | 2012 | A Yaseen, Y Li - Journal of Parallel and Distributed Computing, 2011 - Elsevier | ... PDB #of Res #of Atoms GPU Time L1 hits L1 misses Divergent Branches Sorted (??sec) Unsorted (??sec) Sorted/ Unsorted Sorted Unsorted Sorted Unsorted Sorted Unsorted 1PRB 53 419 49 76 ... 1.05 6,88 5 ,7 80 3,83 9 ,5 00 36 4, 04 8 66 6, 21 7 17 9, 78 4 33 ,5 41 3EOO 4,59 ... |
| 3 | 2lwk | - | http://www.sciencedirect.com/science/article/pii/S0006349515011601 | Predicting 3D Structure, Flexibility, and Stability of RNA Hairpins in Monovalent and Divalent Ion Solutions | 2015 | YZ Shi, L Jin, FH Wang, XL Zhu, ZJ Tan - Biophysical journal, 2015 - Elsevier | TABLE 1 The 32 RNA Molecules for 3D Structure Prediction in This Work 26 2LWK ... |
| 4 | 4wgj | 4lu4, 4py3, 4xi8 | https://royalsocietypublishing.org/doi/abs/10.1098/rsob.210009 | Fic and non-Fic AMPylases: protein AMPylation in metazoans | 2021 | BK Chatterjee, MC Truttmann- Open Biology, 2021 - royalsocietypublishing.org | name, organism name, references, function/targets, structure ( PDB ID) BepC, Bartonella henselae, [59], triggers actin stress fibre formation in HeLa cells, 4WGJ salt bridges occur between (a) Asp117 and Lys119 of the extended flap region (a -hairpin like structure that partially |
| 5 | 4mei | 4o3v, 4jf8, 4lso, 4nhf, 4kz1 | https://www.frontiersin.org/articles/10.3389/fmolb.2021.642606/full | Structural and Biochemical Analysis of OrfG: The VirB8-like Component of the Conjugative Type IV Secretion System of ICESt3 From Streptococcus | 2021 | J Cappele, A Mohamad Ali- Frontiers in molecular, 2021 - frontiersin.org | The first step of structure comparison was conducted with both DALI (Holm and Sander, 1995) and and Henrick, 2004) to fetch a complete list of VirB8 structures (26 PDB entries 16 structures was conserved (2cc3, 3ub1, 3wz3, 3wz4, 4akz, 4ec6, 4jf8, 4kz1, 4lso, 4mei , 4nhf, 4o3v |
| 6 | 6xdh | - | https://www.cell.com/structure/pdf/S0969-2126(22)00495-6.pdf | Room-temperature structural studies of SARS-CoV-2 protein NendoU with an X-ray free-electron laser | 2023 | RJ Jernigan, D Logeswaran, D Doppler, N Nagaratnam- Structure, 2023 - cell.com | using the crystal structure of NendoU PDB entry 6XDH as the search model (Dranow et al., unpublished results) with all solvent and ligand atoms removed. The structure was refined |
| 7 | 3kc6 | - | http://mbio.asm.org/content/8/3/e00481-17.short | Inhibition of Avian Influenza A Virus Replication in Human Cells by Host Restriction Factor TUFM Is Correlated with Autophagy | 2017 | SM Kuo, CJ Chen, SC Chang, TJ Liu, YH Chen - mBio, 2017 - Am Soc Microbiol | ... (B) Modeling of the A/Anhui/1/2013(H7N9) virus PB2 CTD based on the A/Vietnam/1203/2004( H5N1) virus ( PDB ID 3KC6 ). ... as GTP-binding D1), and thus, the lack of association between chTUFM and PB2 627 E may be due to these in sequence and structure differences in ... |
| 8 | 3hhe | 3uw1 | https://www.sciencedirect.com/science/article/pii/S0141022920300971 | Biochemical and structural insights into an Ochrobactrum sp. CSL1 ribose-5-phosphate isomerase A and its roles in isomerization of rare sugars | 2020 | X Ju, X Xu, M Shen, X Mo, H Fan, L Liangzhi- Enzyme and Microbial, 2020 - Elsevier | thermophilus (TtRpiA, 1UJ5), Burkholderia thailandensis (BtRpiA, 3UW1), Bartonella henselae (BhRpiA, 3HHE ) and E. coli (EcRpiA, 1O8B) with ligand-binding structures in PDB , the sequence Homology modeling is an option to investigate the structure -activity relationship of |
| 9 | 6c9e | 5vpr | https://scripts.iucr.org/cgi-bin/paper?mn5126 | Structural evidence for a latch mechanism regulating access to the active site of SufS-family cysteine desulfurases | 2020 | JA Dunkle, MR Bruno, PA Frantom- Section D: Structural Biology, 2020 - scripts.iucr.org | Q5ZXX6 6c9e , A L. pneumophila Lpg0604 Resting state Page 7 Six sequences/ structures belong to the IPR010970 SufS family by sequence homology, and inspection of these structures reveals that five possess the -hairpin structure and one, PDB entry 5vpr from |
| 10 | 3gvh | - | https://scripts.iucr.org/cgi-bin/paper?rf5009 | Conformational changes on substrate binding revealed by structures of Methylobacterium extorquens malate dehydrogenase | 2018 | JM Gonzlez, R Marti-Arbona, JCH Chen- Section F: Structural, 2018 - scripts.iucr.org | Data-collection and quality statistics are summarized in Table 3. 2.6. Structure solution and refinement The malate/lactate dehydrogenase from Brucella melitensis ( PDB entry 3gvh ; Seattle Structural Genomics Center for Infectious Disease, unpublished |