We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6CNZ | 2018 | 3 |
| 4OA8 | 2014 | 3 |
| 4HR2 | 2012 | 3 |
| 3TL3 | 2011 | 3 |
| 4P8R | 2014 | 3 |
| 3TK8 | 2011 | 3 |
| 4EWG | 2012 | 3 |
| 2MRL | 2014 | 3 |
| 4EU1 | 2012 | 3 |
| 2MJ3 | 2014 | 3 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4egf | - | http://pubs.acs.org/doi/abs/10.1021/jacs.5b08968 | A General Strategy for the Discovery of Metabolic Pathways: d-Threitol, l-Threitol, and Erythritol Utilization in Mycobacterium smegmatis | 2015 | H Huang, MS Carter, MW Vetting - Journal of the , 2015 - ACS Publications | ... 5) and (2) an experimentally verified l-xylulose reductase from M. smegmatis (MSMEG_3262;UniProt ID A0QXD6; PDB 4EGF) that shares 44 ... reaction that interconverts d-glyceraldhyde-3Pand dihydroxyacetone phosphate in glycolysis, ie, the active site structure can be ... |
| 2 | 3i0p | - | https://link.springer.com/article/10.1007/s00239-018-9884-2 | Gene encoding a novel enzyme of LDH2/MDH2 family is lost in plant and animal genomes during transition to land | 2019 | LV Puzakova, MV Puzakov, AA Soldatov- Journal of molecular evolution, 2019 - Springer | Prediction of structure and properties of the discov- ered enzyme identified the highest homology to 3I0P pro- tein (P Although tertiary struc- ture of 3I0P protein (malate dehydrogenase from Entamoeba histolytica, https ://doi.org/10.2210/pdb3i 0p/ pdb ) and 1V9N |
| 3 | 3gvh | - | https://scripts.iucr.org/cgi-bin/paper?rf5009 | Conformational changes on substrate binding revealed by structures of Methylobacterium extorquens malate dehydrogenase | 2018 | JM Gonzlez, R Marti-Arbona, JCH Chen- Section F: Structural, 2018 - scripts.iucr.org | Data-collection and quality statistics are summarized in Table 3. 2.6. Structure solution and refinement The malate/lactate dehydrogenase from Brucella melitensis ( PDB entry 3gvh ; Seattle Structural Genomics Center for Infectious Disease, unpublished |
| 4 | 3qh4 | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5070724/ | Identification of amino acids related to catalytic function of Sulfolobus solfataricus P1 carboxylesterase by site-directed mutagenesis and molecular modeling | 2016 | YH Choi, YN Lee, YJ Park, SJ Yoon, HB Lee - BMB reports, 2016 - ncbi.nlm.nih.gov | ... the basis of the Protein Data Bank (PDB) databases reported previously: AfuEst (PDB code: 1jji ...esterase (1qz3), MetEst (2c7b), StoEst (3aik), Mycobacterium marinum esterase (3qh4), PcaEst(3zwq ... was created by homology modeling as the superimposed ribbon structure onto it ... |
| 5 | 3p96 | - | https://www.sciencedirect.com/science/article/pii/S0223523422008376 | Targeting the phosphoserine phosphatase MtSerB2 for tuberculosis drug discovery, an hybrid knowledge based/fragment based approach | 2023 | M Haufroid, AN Volkov, J Wouters- European Journal of Medicinal, 2023 - Elsevier | model (Fc) solved at 2.05 resolution ( PDB : 3P96 ) [24] and with experimental reflection data (Fo). In the present paper, previously acquired knowledge on the structural and inhibition |
| 6 | 4hec | - | http://www.sciencedirect.com/science/article/pii/S0969212614000744 | Structure and Function of RNase AS, a Polyadenylate-Specific Exoribonuclease Affecting Mycobacterial Virulence In Vivo | 2014 | M Romano, R van de Weerd, FCC Brouwer - Structure, 2014 - Elsevier | ... Structural features of the enzyme resemble those of an independently determined structure reported in the Protein Data Bank while our functional characterization was ongoing (PDB code 4HEC) (Abendroth et al., 2014). ... |
| 7 | 4dz6 | - | https://www.degruyter.com/view/journals/pac/89/5/article-p653.xml | How to name atoms in phosphates, polyphosphates, their derivatives and mimics, and transition state analogues for enzyme-catalysed phosphoryl transfer | 2017 | GM Blackburn, J Cherfils, GP Moss- Pure and Applied, 2017 - degruyter.com | Architecture and Design Arts Asian and Pacific Studies Business and Economics Chemistry Classical and Ancient Near Eastern Studies Computer Sciences Cultural Studies Engineering General Interest Geosciences History Industrial Chemistry Islamic and Middle Eastern |
| 8 | 2lwk | - | http://www.sciencedirect.com/science/article/pii/S0006349515011601 | Predicting 3D Structure, Flexibility, and Stability of RNA Hairpins in Monovalent and Divalent Ion Solutions | 2015 | YZ Shi, L Jin, FH Wang, XL Zhu, ZJ Tan - Biophysical journal, 2015 - Elsevier | TABLE 1 The 32 RNA Molecules for 3D Structure Prediction in This Work 26 2LWK ... |
| 9 | 3k31 | - | http://link.springer.com/article/10.1007/s12154-015-0135-3 | Prediction of protein targets of kinetin using in silico and in vitro methods: a case study on spinach seed germination mechanism | 2015 | SP Kumar, VR Parmar, YT Jasrai… - Journal of Chemical …, 2015 - Springer | ... 3 Enoyl-(acyl-carrier protein) reductase Anaplasma phagocytophilum (strain HZ) 3K31 0.25 0.39 ...similarity methods prioritized probable protein targets available from spinach PDB proteome. ...ligand similarity with caffeine, availability of yeast experi- mental structure complex with ... |
| 10 | 6c9e | 5vpr | https://scripts.iucr.org/cgi-bin/paper?mn5126 | Structural evidence for a latch mechanism regulating access to the active site of SufS-family cysteine desulfurases | 2020 | JA Dunkle, MR Bruno, PA Frantom- Section D: Structural Biology, 2020 - scripts.iucr.org | Q5ZXX6 6c9e , A L. pneumophila Lpg0604 Resting state Page 7 Six sequences/ structures belong to the IPR010970 SufS family by sequence homology, and inspection of these structures reveals that five possess the -hairpin structure and one, PDB entry 5vpr from |