We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8DUY | 2022 | 3 |
| 3GVI | 2009 | 3 |
| 3KHP | 2009 | 3 |
| 4U3W | 2014 | 3 |
| 4TV4 | 2014 | 3 |
| 3MBF | 2010 | 3 |
| 3KCQ | 2009 | 3 |
| 5KOI | 2016 | 3 |
| 4WNY | 2014 | 3 |
| 6CNZ | 2018 | 3 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3oks | - | http://onlinelibrary.wiley.com/doi/10.1111/febs.13293/full | Single active‐site mutants are sufficient to enhance serine: pyruvate α‐transaminase activity in an ω‐transaminase | 2015 | D Deszcz, P Affaticati, N Ladkau, A Gegel… - FEBS …, 2015 - Wiley Online Library | ... More distantly related ω-TAms identified in the structure alignments, such as ornithine-AT (PDBcode: 1OAT), 4-aminobutyrate-AT (PDB code: 3OKS and 1SFF), acetylornithine-AT (PDB code:2ORD), l-lysine-epsilon-AT (PDB code: 2CJG), β-phenylalanine-AT (PDB code ... |
| 2 | 3ijp | - | http://www.sciencedirect.com/science/article/pii/S0014579311005503 | Structure and nucleotide specificity of< i> Staphylococcus aureus</i> dihydrodipicolinate reductase (DapB) | 2011 | TS Girish, V Navratna, B Gopal - FEBS letters, 2011 - Elsevier | ... from Escherichia coli, Mycobacterium tuberculosis, Thermotoga maritima and Bartonella henselae have been determined ( [10], [11] and [18]; PDB:1VM6 (Joint Centre for Structural Genomics) and PDB:3IJP (Seattle Structural Genomics Center for Infectious Disease). ... |
| 3 | 3oec | - | http://www.jbc.org/content/286/42/37011.short | Biochemical Studies and Ligand-bound Structures of Biphenyl Dehydrogenase from Pandoraea pnomenusa Strain B-356 Reveal a Basis for Broad Specificity of the Enzyme | 2011 | S Dhindwal, DN Patil, M Mohammadi? - Journal of Biological Chemistry, 2011 - ASBMB | ... PDB code 1BDB and BphB B-356 are shown in black color, and other structures are shown in light colors. These PDB codes are: 2HQ1, 3OEC, 3PKO, 2UVD, 2PNF, 2WSB, 1YDE, 2WDZ, 1HDC, and 1NFR. Reactivity of BphB B-356 with Polychlorinated Biphenyls. ... |
| 4 | 5ji5 | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8080978.3/ | Identifying potential drug targets and candidate drugs for COVID-19: biological networks and structural modeling approaches | 2021 | G Selvaraj, S Kaliamurthi, GH Peslherbe- F1000Research, 2021 - ncbi.nlm.nih.gov | Structural modeling approach to study host-SARS-CoV-2 proteins interaction and drug and similarity and with the highest resolution template automatically from PDB and then Then, the corresponding structures constructed by superimposing the modeled protein structure on to |
| 5 | 4zju | - | https://onlinelibrary.wiley.com/doi/abs/10.1111/mmi.13950 | Structure and substrate specificity of ketoacylacyl carrier protein synthase III from Acinetobacter baumannii | 2018 | WC Lee, MC Jeong, Y Lee, C Kwak- Molecular, 2018 - Wiley Online Library | detailed structures of FAS-related proteins from A. baumannii are still lacking except for the unpublished structure of FabI ( PDB ID: 4ZJU ). To our knowledge, the AbKAS III structures KAS III orthologs, whereas only one is found in the A. baumannii genome. Our structure and |
| 6 | 5eqz | - | https://www.nature.com/articles/s41598-019-53830-x | Membrane directed expression in Escherichia coli of BBA57 and other virulence factors from the Lyme disease agent Borrelia burgdorferi | 2019 | KE Robertson, CD Truong, FM Craciunescu, PL Chiu- Scientific reports, 2019 - nature.com | All available structures from the genus Borrelia represent proteins expressed without a membrane Towards elucidating structure and function of these critical proteins, we directed translocation of to the outer membrane, Another criterion was the lack of structures in the PDB. RevA has a structure in the PDB33, a 1.80 Å crystal structure (accession no. 5EQZ, unpublished [J.K. Yano, A.H. Sullivan, J. Abendroth, D.D. Lorimer, and T.E. Edwards]), which is of the soluble domain that was expressed in the c |
| 7 | 3emk | - | http://www.sciencedirect.com/science/article/pii/S0022283611000258 | The Crystal Structure of l-Sorbose Reductase from< i> Gluconobacter frateurii</i> Complexed with NADPH and l-Sorbose | 2011 | K Kubota, K Nagata, M Okai, K Miyazono? - Journal of molecular Biology, 2011 - Elsevier | ... Appendix A. ... Strictly conserved residues among the proteins are shown with a red background. Protein names are shown as PDB accession numbers: 2HQ1, glucose/ribitol dehydrogenase from Clostridium thermocellum; 3EMK, glucose/ribitol dehydrogenase from Brucella melitensis; ... |
| 8 | 4gnv | - | http://pubs.rsc.org/en/content/articlehtml/2013/cc/c3cc46646a | Selective trihydroxyazepane NagZ inhibitors increase sensitivity of Pseudomonas aeruginosa to beta-lactams | 2013 | M Mondon, S Hur, G Vadlamani, P Rodrigues? - Chemical Communications, 2013 - pubs.rsc.org | ... The complex was solved by molecular replacement using a model of BcNagZ (PDB 4GNV) from which ligands and solvents were removed. ... Coordinates and structure factors for the BcNagZ?azepane complex are available in the Protein Data Bank (4MSS). ... |
| 9 | 3cez | - | https://www.sciencedirect.com/science/article/pii/S0891584920311321 | On the functionality of a methionine sulfoxide reductase B from Trypanosoma cruzi | 2020 | DG Arias, MS Cabeza, ML Echarren- Free Radical Biology, 2020 - Elsevier | These enzymes can reduce specifically one or another of the isomers of MetSO (free and protein-bound). This redox modification could change the structure and function of many proteins, either concerned in redox or other metabolic pathways ... Models were based on the resolved structure of MSRB from Methanothermobacter thermautotrophicus (PDB 2K8D), Burkholderia pseudomallei (PDB 3CEZ), and Xanthomonas campestris (PDB 3HCI). |
| 10 | 4q15 | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/prot.25441 | Development of METALACTIVE SITE and ZINCCLUSTER tool to predict active site pockets | 2018 | M Ajitha, K Sundar, S Arul Mugilan- Proteins: Structure, 2018 - Wiley Online Library | As zinc ion acts as a cofactor for this protein, ZN and PDB ID (3CAJ) of this of Sobolev et al.,[14] who identified the presence of Zinc using three-dimensional structure and he 1Q15, 0.86, 2Q15, 0.86, 3Q15, 0.84, 4Q15 , 0.28, 5Q15, 0.86, 6Q15, 0.86, 7Q15, 8.86, 8Q15, 0.86, 9Q15 |