We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4LHR | 2013 | 3 |
| 3GVF | 2009 | 3 |
| 4KZK | 2013 | 3 |
| 8DYA | 2022 | 3 |
| 3GWE | 2009 | 3 |
| 4K73 | 2013 | 3 |
| 4XI8 | 2016 | 3 |
| 8SLG | 2023 | 3 |
| 4LVU | 2013 | 3 |
| 3TAV | 2011 | 3 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4dz4 | - | https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0248991 | Structure of the E. coli agmatinase, SPEB | 2021 | I Chitrakar, SF Ahmed, AT Torelli, JB French- Plos one, 2021 - journals.plos.org | The first stage used the default parameters with the structure of Burkholderia thailandensis hypothetical agmatinase ( 4DZ4 ) [34] as To place the ligand in the SPEB active site, the structure of the D. radiodurans agmatinase with bound hexane-1,6-diamine ( PDB code 1WOG |
| 2 | 3slg | - | http://pubs.acs.org/doi/abs/10.1021/bi301135b | Human UDP-?-d-xylose Synthase and Escherichia coli ArnA Conserve a Conformational Shunt That Controls Whether Xylose or 4-Keto-Xylose Is Produced | 2012 | SJ Polizzi, RM Walsh Jr, WB Peeples, JM Lim? - Biochemistry, 2012 - ACS Publications | ... Recently, the Seattle Structural Genomics Center for Infectious Disease deposited the atomic coordinates of an annotated UGA decarboxylase from Burkholderia pseudomallei (PDB entry3SLG) which conserves the same proline packing surface associated with the ... |
| 3 | 4zju | - | https://onlinelibrary.wiley.com/doi/abs/10.1111/cbdd.13686 | Ternary complex formation of AFN1252 with Acinetobacter baumannii FabI and NADH: Crystallographic and biochemical studies | 2020 | NK Rao, V Nataraj, M Ravi- Chemical Biology &, 2020 - Wiley Online Library | 6AHE) with the NAD bound AbFabI ( PDB :4JZU) (243 C atoms; PDB ; 4ZJU ),showed an rms Structural superposition revealed no major conformational changes except in The crystal structure of AbFabI in the ternary complex is similar to the reported structures of EcFabI |
| 4 | 3p96 | - | http://onlinelibrary.wiley.com/doi/10.1002/prot.24238/full | Identification of a novel ligand binding site in phosphoserine phosphatase from the hyperthermophilic archaeon Thermococcus onnurineus | 2013 | TY Jung, YS Kim, BH Oh, E Woo - Proteins: Structure, Function, and Bioinformatics, 2013 - Wiley Online Library | ... Flexible movement between the open structure (PDB ID: 1L8L, 1RKV, 2FEA, and 3M1Y), colored in bright orange, and closed structures (PDB ID: 1F5S, 1L7M, 1J97, 1L7P, 3P96, and 3KD3), colored in bluewhite, were analyzed by the program DynDom. ... |
| 5 | 4weo | - | https://febs.onlinelibrary.wiley.com/doi/abs/10.1002/1873-3468.12834 | Rational design of Meso2,3butanediol dehydrogenase by molecular dynamics simulation and experimental evaluations | 2017 | Z Pu, F Ji, J Wang, Y Zhang, W Sun, Y Bao- FEBS letters, 2017 - Wiley Online Library | (A) Structure superposition of the BDHs in Protein Data Bank ( PDB code 1GEG: cyan; 3A28: green; 3WYE: yellow; 4WEO : red). (B) Sequence alignment between the four BDHs. It was prepared with the program Espript 3.0 (http://espript.ibcp.fr) |
| 6 | 3tmg | - | https://www.frontiersin.org/articles/10.3389/fmicb.2019.02572/full?report=reader | Examination of the Glycine Betaine-Dependent Methylotrophic Methanogenesis Pathway: Insights Into Anaerobic Quaternary Amine Methylotrophy | 2019 | AJ Creighbaum, T Ticak, S Shinde, X Wang- Frontiers in, 2019 - frontiersin.org | We therefore generated models of MV8460 using the apo-crystal structure of DhMtgB ( PDB 2QNE) as a (A) The models represent the aligned global structure of DhMtgB Various crystal structures of GB-binding enzymes; 1R9L (Schiefner et al., 2004), 6EYG, 3TMG (Li et al |
| 7 | 3p96 | 3km3, 3k9g | http://scripts.iucr.org/cgi-bin/paper?ba5235 | Can I solve my structure by SAD phasing? Planning an experiment, scaling data and evaluating the useful anomalous correlation and anomalous signal | 2016 | TC Terwilliger, G Bunkczi, LW Hung - Section D: Structural , 2016 - scripts.iucr.org | ... Journal logo, STRUCTURAL BIOLOGY. ... 49-93.] ) that accounts for over 70% of depositions of experimentally phased structures in the Protein Data Bank (PDB; Berman et ... requires a specific element to be present at a limited number of sites in the macromolecular structure and the ... |
| 8 | 6nb3 | 6q04 | https://internal-journal.frontiersin.org/articles/10.3389/fmolb.2021.607443/full | Molecular mechanisms behind anti SARS-CoV-2 action of lactoferrin | 2021 | M Miotto, L Di Rienzo, L B- Frontiers in, 2021 - internal-journal.frontiersin.org | Structural studies determined the structures of such protein both in free form and bound to ACE2 of the ACE2 receptor with SARS-CoV-2 spike receptor-binding domain, RBD ( PDB id: 6m17 ... The 10 structural analogs (as identified by TM-align Zhang and Skolnick (2005)) found by I-tasser are PDB id: 5X58, 6NZK, 6NB3, 3JCL, 5I08, 6CV0, 5SZS, 5WRG , 6UTK, 6B7N. The first (out of five) model returned |
| 9 | 5bnt | - | https://scripts.iucr.org/cgi-bin/paper?dp5109 | Structure of aspartate -semialdehyde dehydrogenase from Francisella tularensis | 2018 | NJ Mank, S Pote, KA Majorek, AK Arnette- Section F: Structural, 2018 - scripts.iucr.org | entry 3pzr; Pavlovsky et al., 2012), Pseudomonas aeruginosa ( PDB entry 5bnt ; Seattle Structural N-acetyl- -glutamyl-phosphate reductases (ArgCs), including proteins with known structure : ArgCs from entry 2i3a; Cherney et al., 2007), Salmonella typhi- murium ( PDB entry 2g17 |
| 10 | 4odj | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/pro.3545 | CrossStrand Disulfides in the Hydrogen Bonding Site of Antiparallel sheet (aCSDhs): Forbidden Disulfides that are Highly Strained, Easily Broken | 2018 | NL Haworth, MJ Wouters, MO Hunter, L Ma- Protein, 2018 - Wiley Online Library | Examples include interleukin 36 receptor antagonist (PDB: 1md6) and the previously mentioned ML domains. Other aCSDhs span only short segments of sequence straddling a β‐hairpin (PDBs: 5bvw, 3fl7, 1htd, 3ngm, 4odj). |