We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4DZ3 | 2012 | 3 |
| 4OA8 | 2014 | 3 |
| 3TAV | 2011 | 3 |
| 4U7X | 2014 | 3 |
| 3G87 | 2009 | 3 |
| 6CNZ | 2018 | 3 |
| 4TU1 | 2014 | 3 |
| 5VCU | 2017 | 3 |
| 4U3W | 2014 | 3 |
| 4KZP | 2013 | 3 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3oks | - | http://onlinelibrary.wiley.com/doi/10.1111/febs.13293/full | Single active‐site mutants are sufficient to enhance serine: pyruvate α‐transaminase activity in an ω‐transaminase | 2015 | D Deszcz, P Affaticati, N Ladkau, A Gegel… - FEBS …, 2015 - Wiley Online Library | ... More distantly related ω-TAms identified in the structure alignments, such as ornithine-AT (PDBcode: 1OAT), 4-aminobutyrate-AT (PDB code: 3OKS and 1SFF), acetylornithine-AT (PDB code:2ORD), l-lysine-epsilon-AT (PDB code: 2CJG), β-phenylalanine-AT (PDB code ... |
| 2 | 4f3p | - | https://www.sciencedirect.com/science/article/pii/S0141813018328228 | Local structural motifs in proteins: Detection and characterization of fragments inserted in helices | 2018 | N Balasco, G Smaldone, A Ruggiero- International journal of, 2018 - Elsevier | insertion: A) the substrate binding proteins ( PDB IDs: 1GGG, 1HLS, 1IIT, 2IEE, 2YLN, 4EQ9, 4F3P , 4H5F, 4I62 in red, 3QFH in blue), and C) the elongation factors EF-1A/EF-Tu ( PDB IDs: 1EFC In particular, they could (a) present an irregular loop structure , (b) form -hairpins or |
| 3 | 4zju | - | https://onlinelibrary.wiley.com/doi/abs/10.1111/cbdd.13686 | Ternary complex formation of AFN1252 with Acinetobacter baumannii FabI and NADH: Crystallographic and biochemical studies | 2020 | NK Rao, V Nataraj, M Ravi- Chemical Biology &, 2020 - Wiley Online Library | 6AHE) with the NAD bound AbFabI ( PDB :4JZU) (243 C atoms; PDB ; 4ZJU ),showed an rms Structural superposition revealed no major conformational changes except in The crystal structure of AbFabI in the ternary complex is similar to the reported structures of EcFabI |
| 4 | 3uve | - | https://www.nature.com/articles/s42003-022-03684-3 | A complete nicotinate degradation pathway in the microbial eukaryote Aspergillus nidulans | 2022 | E Bokor, J mon, M Varga, A Szekeres- Communications, 2022 - nature.com | ( PDB code: 3awd) and carveol dehydrogenase CDH from Mycobacterium avium ( PDB code: 3uve HxnM shows striking structural similarity with its closest known structural homolog, the |
| 5 | 3cez | - | http://onlinelibrary.wiley.com/doi/10.1002/prot.23141/full | Structural and biochemical analysis of mammalian methionine sulfoxide reductase B2 | 2011 | FL Aachmann, GH Kwak, R Del Conte? - Proteins: Structure, Function, and Bioinformatics, 2011 - Wiley Online Library | ... coordinate files of the minimized MsrB2 family are deposited in the Protein Data Bank (PDB) under accession ... pneumoniae (3e0o),49Neisseria meningitidis (3hcg),46Methanothermobacter thermautotrophicus (2k8d), Burkholderia pseudomallei (3cez), Neisseria gonorrhoeae ... |
| 6 | 5vpq | - | https://febs.onlinelibrary.wiley.com/doi/abs/10.1111/febs.15854 | Conserved residues Glu37 and Trp229 play an essential role in protein folding of lactamase | 2021 | A Chikunova, MP Manley, M Ud Din Ahmad- The FEBS, 2021 - Wiley Online Library | (2013). Cation- Interactions in -Lactamases: The Role in Structural Stability, Cell Biochem. Biophys. 66, 147155 [49] RP Joosten, F. Long, GN Murshudov & A. Perrakis. (2014). The PDB -REDO server for macromolecular structure model optimization, IUCrJ. 1, 213220 ... Pro226-Trp229-Pro251-Pro252-(Phe287) chain: β-lactamase from Burkholderia phymatum—gold (5VPQ), ... |
| 7 | 6nb6 | - | https://www.annualreviews.org/doi/abs/10.1146/annurev-biophys-062920-063711 | Review of COVID-19 antibody therapies | 2021 | J Chen, K Gao, R Wang, DD Nguyen- Annual review of, 2021 - annualreviews.org | S230 SARS-CoV RBD IgG = 0.06 / BLI (73) 6NB6 (73) 4.30 Three-Dimensional Structure Alignment All of the available 3D structures of the SARS-CoV-2 S-protein RBD in complex with antibod- ies are aligned to ACE2 The PDB ID of these complexes can be found in Table 1 |
| 8 | 3emk | - | http://www.sciencedirect.com/science/article/pii/S0022283611000258 | The Crystal Structure of l-Sorbose Reductase from< i> Gluconobacter frateurii</i> Complexed with NADPH and l-Sorbose | 2011 | K Kubota, K Nagata, M Okai, K Miyazono? - Journal of molecular Biology, 2011 - Elsevier | ... Appendix A. ... Strictly conserved residues among the proteins are shown with a red background. Protein names are shown as PDB accession numbers: 2HQ1, glucose/ribitol dehydrogenase from Clostridium thermocellum; 3EMK, glucose/ribitol dehydrogenase from Brucella melitensis; ... |
| 9 | 3uam | - | https://bmcresnotes.biomedcentral.com/articles/10.1186/s13104-017-2429-8 | The discovery of novel LPMO families with a new Hidden Markov model | 2017 | GP Voshol, E Vijgenboom - BMC Research , 2017 - bmcresnotes.biomedcentral.com | ... Q3JY22. 3UAM. nd. nd. AA10 (formerly CBM33). ... The structure of one of the AA10 LPMOs fromStreptomyces coelicolor A3(2) (PDB ID: 4OY7) [39], with the copper atom shown as a sphereand highly conserved residues labeled and shown as sticks. Genome mining for LPMOs. ... |
| 10 | 4jcp | - | https://www.nature.com/articles/s41598-018-23821-5 | Structural basis of interaction between dimeric cyclophilin 1 and Myb1 transcription factor in Trichomonas vaginalis | 2018 | T Martin, YC Lou, CC Chou, SY Wei, S Sadotra- Scientific reports, 2018 - nature.com | S1). Like Caenorhabditis elegans Cyp3 (Ccyp3; PDB : 1DYW) and Brugia malayi CypB (BcypB; PDB : 4JCP ), TvCyP1 is a divergent loop cyclophilin and possesses an additional loop in the a) Structure of TvCyP1 dimer showing secondary structural elements ( PDB : 5YB9 |