We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4LVU | 2013 | 3 |
| 3KNU | 2009 | 3 |
| 7L6C | 2021 | 3 |
| 3TL3 | 2011 | 3 |
| 3TK8 | 2011 | 3 |
| 3S99 | 2011 | 3 |
| 6BRL | 2018 | 3 |
| 4MPQ | 2013 | 3 |
| 4LHR | 2013 | 3 |
| 5V0X | 2018 | 3 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3ndn | - | http://pubs.acs.org/doi/abs/10.1021/bi201090n | Characterization of the Side-Chain Hydroxyl Moieties of Residues Y56, Y111, Y238, Y338, and S339 as Determinants of Specificity in E. coli Cystathionine beta-Lyase | 2011 | PH Lodha, SM Aitken - Biochemistry, 2011 - ACS Publications | ... figure Scheme 2. Observed Contacts of the PLP-AVG External Aldimine Active Site of eCBL a. a The dotted lines represent putative hydrogen bond distances of ?3.3 ? between heteroatoms. The image was constructed using ChemDraw and PDB entry 1CL2.(3). ... |
| 2 | 4dhe | - | http://www.sciencedirect.com/science/article/pii/S0022283616303655 | Molecular dissection of the interface between the Type VI secretion TssM cytoplasmic domain and the TssG baseplate component | 2016 | L Logger, MS Aschtgen, M Gurin, E Cascales - Journal of Molecular , 2016 - Elsevier | ... a C-terminal extension (Ct, green). TssM Cyto/NTP was modelled using HHpredbased on the X-ray structure of the Burkholderia thailandensis EngB GTP-bindingprotein (PDB ID: 4DHE). TssM Cyto/Ct was modelled using ... |
| 3 | 3qh4 | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5070724/ | Identification of amino acids related to catalytic function of Sulfolobus solfataricus P1 carboxylesterase by site-directed mutagenesis and molecular modeling | 2016 | YH Choi, YN Lee, YJ Park, SJ Yoon, HB Lee - BMB reports, 2016 - ncbi.nlm.nih.gov | ... the basis of the Protein Data Bank (PDB) databases reported previously: AfuEst (PDB code: 1jji ...esterase (1qz3), MetEst (2c7b), StoEst (3aik), Mycobacterium marinum esterase (3qh4), PcaEst(3zwq ... was created by homology modeling as the superimposed ribbon structure onto it ... |
| 4 | 2kz0 | 2mcq | http://www.jbc.org/content/289/35/24588.short | Structural and spectroscopic insights into BolA-glutaredoxin complexes | 2014 | T Roret, P Tsan, J Couturier, B Zhang - Journal of Biological Chemistry, 2014 - ASBMB | ... and the AtGrxS14-BolA2 apo-heterodimer model (2MMA) are available at the Research Collaboratory for Structural Bioinformatics (RCSB) Protein Data Bank. ... Accordingly, in Ehrlichia chaffeensis and Rickettsia prowazekii BolA structures (PDB entry 2KZ0 and 2MCQ ... |
| 5 | 4gl8 | - | https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1009180 | Host-specific functional compartmentalization within the oligopeptide transporter during the Borrelia burgdorferi enzootic cycle | 2021 | AM Groshong, MA McLain, JD Radolf- PLoS pathogens, 2021 - journals.plos.org | Structural homology models demonstrated variations within the binding pockets of OppA1, 2, and 5 indicative of different peptide repertoires We used larval immersion feeding [43] to confirm that oppA1 is essential for structural integrity of the spirochete during the blood meal |
| 6 | 3s99 | - | http://mbio.asm.org/content/4/1/e00615-12.short | Evidence for an ABC-Type Riboflavin Transporter System in Pathogenic Spirochetes | 2013 | RK Deka, CA Brautigam, BA Biddy, WZ Liu? - mBio, 2013 - Am Soc Microbiol | ... bind a small molecule between its two lobes. An adenine-binding protein from Brucella melitensis (unpublished PDB accession code 3S99; RMSD = 1.8 ? over 260 comparable C ? atoms) is also structurally similar to TP0298. ... |
| 7 | 6xdh | - | https://www.cell.com/structure/pdf/S0969-2126(22)00495-6.pdf | Room-temperature structural studies of SARS-CoV-2 protein NendoU with an X-ray free-electron laser | 2023 | RJ Jernigan, D Logeswaran, D Doppler, N Nagaratnam- Structure, 2023 - cell.com | using the crystal structure of NendoU PDB entry 6XDH as the search model (Dranow et al., unpublished results) with all solvent and ligand atoms removed. The structure was refined |
| 8 | 3inn | 4ed4 | http://pubs.acs.org/doi/abs/10.1021/ci500553a | Extraction of Protein Binding Pockets in Close Neighborhood of Bound Ligands Makes Comparisons Simple Due to Inherent Shape Similarity | 2014 | T Krotzky, T Rickmeyer, T Fober… - Journal of chemical …, 2014 - ACS Publications | ... To set up a more challenging task with respect to conformational and structural diversity, we ... serverPISCES of the Dunbrack lab(35) was employed, which kept only PDB structures that agreed ... thesequence identity does not exceed 25%, the method of structure determination is ... |
| 9 | 6cy1 | - | https://www.sciencedirect.com/science/article/pii/S0141813020353630 | Essential biochemical, biophysical and computational inputs on efficient functioning of Mycobacterium tuberculosis H37Rv FtsY | 2021 | MK Ekka, LS Meena- International Journal of Biological Macromolecules, 2021 - Elsevier | FtsY is comprised of helices, but this structural pattern was shown to change these ligands cause significant conformational change by variating the secondary structure to transduce GTP-binding proteins. SRP signal recognition particle. PDB protein data bank. fts filamentous |
| 10 | 6nb8 | - | https://www.preprints.org/manuscript/202005.0270 | Use of Isoelectric Point for Fast Identification of Anti-SARS CoV-2 Coronavirus Proteins | 2020 | K Mallik - 2020 - preprints.org | If we follow the radial structure of the SARS CoV-2 virion, a gradual fall the in the pI values is 6NB8 (+) Human S230 antigen-binding fragment light chain 6.046 to make anti-viral drugs for SARS CoV-2. From the pI consideration, application of human Interferon- ( PDB ID 1AU1 |