We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3NG3 | 2010 | 1 |
| 5W7Z | 2017 | 1 |
| 3VAV | 2012 | 1 |
| 7SOD | 2022 | 1 |
| 4EXQ | 2012 | 1 |
| 3L3B | 2010 | 1 |
| 5IHV | 2016 | 1 |
| 7K6A | 2021 | 1 |
| 3LV0 | 2010 | 1 |
| 6BNI | 2018 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4j07 | - | https://kuscholarworks.ku.edu/handle/1808/27856 | Strategies to improve the immunogenicity of subunit vaccine candidates | 2018 | Y Wei - 2018 - kuscholarworks.ku.edu | Oligomeric state of lumazine synthase Quaternary structure Organism PDB ID Pentamer 1DI0 2F59 ; 2I0F 2OBX 2O6H 2JFB 1C41 2VI5; 2C9B; 2C92; 2C94; 2C97; 2C9D; 1W19; 1W29 4J07 1EJB 1KYV; 1KYX; 1KYY Decamer Brucella spp |
| 2 | 4hwg | 5dld | http://www.jbc.org/content/293/26/10119.short | The tetrameric structure of sialic acidsynthesizing UDP-GlcNAc 2-epimerase from Acinetobacter baumannii: A comparative study with human GNE | 2018 | TP Ko, SJ Lai, TJ Hsieh, CS Yang, Y Chen- Journal of Biological Chemistry, 2018 - ASBMB | known for at least 10 species ( PDB codes 1F6D, 1O6C, 1V4V, 3BEO, 3DZC, 3OT5, 4HWG , 4NEQ, 5DLD Structural determination and refinement molecular replacement with the PHENIX AutoMR (24) using the previously published human homologue structure ( PDB code 4ZHT |
| 3 | 4k9d | - | https://pubs.rsc.org/en/content/articlehtml/2021/ra/d0ra10119b | Thermal stability and structure of glyceraldehyde-3-phosphate dehydrogenase from the coral Acropora millepora | 2021 | AM Perez, JA Wolfe, JT Schermerhorn, Y Qian- RSC Advances, 2021 - pubs.rsc.org | The PDB validation server shows this structure to be typical of structures of comparable resolution in measures of R and number of Ramachandran, sidechain and real-space R-value Z score (RSRZ) outliers ( PDB ID 6PX2) The model used for molecular replacement was 4K9D |
| 4 | 4hjh | 3uw2 | http://www.sciencedirect.com/science/article/pii/S1876162317300366 | Biology, Mechanism, and Structure of Enzymes in the -d-Phosphohexomutase Superfamily | 2017 | KM Stiers, AG Muenks, LJ Beamer - in Protein Chemistry and Structural , 2017 - Elsevier | ... Enzymes in the α-d-phosphohexomutases superfamily catalyze the reversible conversion of phosphosugars, such as glucose 1-phosphate and glucose 6-phosphate. These reactions are fundamental to primary metabolism across the kingdoms of life and are required for a myriad of cellular processes, ... |
| 5 | 3u0g | - | http://www.sciencedirect.com/science/article/pii/S0141022916301995 | A Novel highly thermostable branched-chain amino acid aminotransferase from the crenarchaeon Vulcanisaeta moutnovskia | 2017 | TN Stekhanova, AL Rakitin, AV Mardanov - Enzyme and Microbial , 2017 - Elsevier | ... The first X-ray diffraction structure of BCATs, namely, the structure of BCAT ... The search for close homologues of VMUT0738 using BLAST showed the highest levels of identity with hypothetical BCATs from other members of the genera Vulcanisaeta … The homologues with known structures were TUZN1299 from T. uzoniensis (PDB ID 5CE8, 54% identity, query cover 94%), putative BCAT from Burkholderia pseudomallei (PDB ID 3U0G, 47% identity, query cover 94% ... |
| 6 | 3u0d | - | http://www.jbc.org/content/294/51/19523.short | The structure of the bacterial ironcatecholate transporter Fiu suggests that it imports substrates via a two-step mechanism | 2019 | R Grinter, T Lithgow- Journal of Biological Chemistry, 2019 - ASBMB | TBDTs are highly divergent in sequence but share a common structural architecture , consisting of a 22 The structure of Fiu consists of a 22-stranded transmembrane -barrel characteristic of the DALI web server (37) identified PiuA from Acinetobacter baumannii ( PDB code 5FP1 |
| 7 | 3ecd | - | http://www.uib.no/People/nmaxt/papers/pan1.pdf | Model the Solvent-Excluded Surface of 3D Protein Molecular Structures Using Geometric PDE-Based Level-Set Method | 2009 | Q Pan, XC Tai - Communications in Computational Physics, 2009 - uib.no | ... where ? is a very small value and chosen to be O(?x). 3 Numerical implementation 3.1 Initial construction The data of the complex 3D protein molecular structures, saved as pdb format files, can be downloaded from the free website of the protein data bank: http://www.rcsb.org. ... |
| 8 | 3s99 | - | https://scripts.iucr.org/cgi-bin/paper?jb5014 | The evolving story of AtzT, a periplasmic binding protein | 2019 | ML Dennis, L Esquirol, T Nebl, J Newman- Section D: Structural, 2019 - scripts.iucr.org | (2019). D75, 9951002 Page 5. cluster protein and had electron density in the binding site for a purine. Post hoc analysis of the structure and sequence showed that PDB entry 3s99 has 54% sequence identity and an rmsd of 1.2A (over $330 residues) to AtzT |
| 9 | 3d6b | - | http://scripts.iucr.org/cgi-bin/paper?S0907444913021859 | Structure of the prolyl-acyl carrier protein oxidase involved in the biosynthesis of the cyanotoxin anatoxin-a | 2013 | K Moncoq, L Regad, S Mann, A Mejean and O Ploux - Acta Crystallographica Section D Biological Crystallography, 2013 - scripts.iucr.org | ... coordinates and structure factors have been deposited in the Protein Data Bank (PDB) as entry ...PDB code, Enzyme, Enzyme class, Source, Identity (%), Similarity (%), Rmsd (?), No. ... 3d6b, Glutaryl-CoA dehydrogenase (apoenzyme), GCD, Burkholderia pseudomallei, 27, 45, 1.88, ... |
| 10 | 3nf4 | - | https://www.mdpi.com/2073-4352/9/11/548 | Crystal Structures of Putative Flavin Dependent Monooxygenase from Alicyclobacillus Acidocaldarius | 2019 | H Moon, S Shin, J Choe- Crystals, 2019 - mdpi.com | was obtained using the Molrep program of CCP4 package [13] with Acyl-CoA dehydrogenase (M. thermoresistibile) structure ( PDB ID: 3NF4 ) as a The data collection and refinement statistics are summarized in Table 1. The coordinate and structure factors for apo and FAD |